Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0790 ATGGCCAAGGCACGATTTGGGTTTTTCTTCATGTTGTTTATTGTCCTTGCTTCTCATATGATGGTGCAAACCGAGGGAAGGCATTGTGAGTCAAAGAGCCATAGGTTTAAAGGATTGTGCCATAGCGACCACAACTGTGCTTCCATTTGCCTCGTCGAAGGTTTCACCAGTGGCAAGTGCCATGGGTTCCGTCAACGATGCTTTTGCACCAAGGTTTGTTAG 222 0.4685 MAKARFGFFFMLFIVLASHMMVQTEGRHCESKSHRFKGLCHSDHNCASICLVEGFTSGKCHGFRQRCFCTKVC 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0790 73 SUPERFAMILY Scorpion toxin-like 27 73 IPR036574 -
Lal17g0790 73 PANTHER DEFENSIN 1 73 - -
Lal17g0790 73 PANTHER DEFENSIN-LIKE PROTEIN 1 1 73 - -
Lal17g0790 73 PRINTS Purothionin signature 28 43 IPR008176 GO:0006952
Lal17g0790 73 PRINTS Purothionin signature 58 72 IPR008176 GO:0006952
Lal17g0790 73 Gene3D - 27 73 IPR036574 -
Lal17g0790 73 SMART gth_4 28 73 IPR003614 GO:0006952
Lal17g0790 73 Pfam Gamma-thionin family 27 73 - -
Lal17g0790 73 ProSitePatterns Gamma-thionins family signature. 27 50 IPR008176 GO:0006952
Lal17g0790 73 CDD Knot1 38 70 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0790 Lal-Chr17 5794653 5795498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0790 1 73 Plant Defensins Gene Families AT5G63660 49.315 3.30e-23 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0790 - - lang:109326357 134.42