Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0745 ATGAACAAGGTCCAAATTGAAATTACCATTCCTCACTTGTTCAGATGCCCTATAAGTCTAGACTTGCTTGAAGATCCAGTGACCTTAAGCACAGGCCAAACCTATGACAGATCAAGCATAGAAAAATGGCTAGGTGCTGGTAATCTCACATGTCCTGTCACAATGCAGAAGCTTCATGATCCATCCATTGTTCCCAACCACACACTAAAGCATTTGATTGATCAGTGGCTTCAACTTGGTCACCAATTTCACCCTGGTAACTCTGCAACCATAGATTATCTAGCTTCTCTAAAACACACCCTTCAATCTCATGATTCCACTTTAGAAAACAAGGTCCAAGCACTTGACAAAATTAGAGTTCTGTCTTATGAGTATTGCTCTTTCAAAAAATCTTGTTTCACCCAATTGAGTTTCTTGCCTCTACTCTTGGAACTAGTTTTTGGAACTGAATATGCTCAACCTTCTAGAAATCACATGGAATTCAAGGAGGTAGCACTTTCTTGTATTCTAAAATTGTTACCCCTTGTGAGTTTGGAGCCTTTAAATATGATCAAAGATGAATCCAATTTCAAAGCATTTATGCTATTATTTGAAAAGGGTAGTATTTCAATCAAGATTAGTTTGTGTAATCTTATAGAGTCAACATCAGAAGATATATGTTACATGCTTGGAAACTCTCACAAACTGGTACAAGAAATTGTTCTAATTTGTCACCAAAATTGTGAACTTTCTAAGGCTGCAATAAAAGCTTTATCAGCATTATGTTCTTTACAATCCAACAAAGAGAGTTTGGTAAGAGCAGGAGCAATAGATGGAATCATAACATACATTTCAGGCTGTGAAACAAAGGAGAAGAATTTAGCTCCATTAGCCATGAATATAATTGAGAAACTCATGGTGCTAGATAGTGCTAAAGAGGCATTGGTGAATAATCCAAATGGGGTTGAAACTTTGGTCAAAATGGTATTCAAAGTGTGTAACCAAGAATGTAGTGAAGGTGCTGTTGAAGTACTTTTGATTGTTTGTGATGATTATAGGAATGCAAGAGAAGAAGCTATTGGTGCTGGAGTTTTGACTCAGTTGTTGTTTCTTCTACAGAGTCAGTGTGGCACAAAAACTAAGACAAAGGCAAGAATGCTTCTCAAATTGTTAAGATCAAAATGGAGTGAGGAATCAAAGCAGATTTAG 1188 0.367 MNKVQIEITIPHLFRCPISLDLLEDPVTLSTGQTYDRSSIEKWLGAGNLTCPVTMQKLHDPSIVPNHTLKHLIDQWLQLGHQFHPGNSATIDYLASLKHTLQSHDSTLENKVQALDKIRVLSYEYCSFKKSCFTQLSFLPLLLELVFGTEYAQPSRNHMEFKEVALSCILKLLPLVSLEPLNMIKDESNFKAFMLLFEKGSISIKISLCNLIESTSEDICYMLGNSHKLVQEIVLICHQNCELSKAAIKALSALCSLQSNKESLVRAGAIDGIITYISGCETKEKNLAPLAMNIIEKLMVLDSAKEALVNNPNGVETLVKMVFKVCNQECSEGAVEVLLIVCDDYRNAREEAIGAGVLTQLLFLLQSQCGTKTKTKARMLLKLLRSKWSEESKQI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0745 395 PANTHER OS02G0542800 PROTEIN 9 387 - -
Lal17g0745 395 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lal17g0745 395 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lal17g0745 395 Gene3D - 87 394 IPR011989 -
Lal17g0745 395 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lal17g0745 395 SUPERFAMILY ARM repeat 235 377 IPR016024 -
Lal17g0745 395 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lal17g0745 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 82 IPR013083 -
Lal17g0745 395 PANTHER WDSAM1 PROTEIN 9 387 IPR045185 GO:0061630
Lal17g0745 395 SUPERFAMILY RING/U-box 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0745 Lal-Chr17 5319373 5320560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0745 1 392 U-box Gene Family AT1G49780 30.266 3.67e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0745 - - gmx:100815247 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0745 17 5319373 5320560 Lal17g0745 17 5319373 5320560 ECH