Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0731 ATGAGAAAACCCATCTCCATCTCCATCTCCACCACCTTCATCCTCATTCTCTCTATGACTTCTCTTCTCTCCCTCTCTCTCCTCTTCTTCCTCTCTCTCTCTCCCATCTCTCTCTCCCAACAACAACAACCTCCCTCTCCACATATCCATCAAGCATGCAAGGCCACGCGCTTTCCTCACCATTGCATCTCCACTCTCTCTCAATCCACCCTCCCTTCTACTCCTCTCCATTTCATCCATTTCGCCACGTCAGCAACCATCCACAACCTCCACATTGCTAAATCCATGCTCAATTCCCTCCTCCCCTCTTACCCTACTGCCGCCGAATCCTGCCTCCAGATCCTTAATTACTCCCATCACCGTACCTCGCTCGCCGCGGATGCCCTCGCGCGAGGCCGAACAAAGGACGCTCGCGCGTGGATGTCCGCGGCACTGAGTTACCAGTACGGGTGCTGGTCAGGGTTAAAATATGTCAACCATACTGCATTGGTTTCCGAAACGATGTCGTTTCTTGATAACCTTGTGTCTCTTACCAGCAATGCTCTCAGCATGATTGTATCGTATGATATATTCGGAAACGACACCGTGTTGTGGACACCGCCACGAACTGAACGAGACGGTTTCTGGGAGCCAGCGTTGGGATCGGGTTCGGAATTCCGAGCTGGGTTACCGGTTTTGGAAGCTGATGCTGTGGTGTGTAAGGGGGGAGGGAGTGGTTGTTATAAGACGGTGCAGGAGGCGGTTAACGCTGCGCCGGAGAGGGCGGTGGGTGAGAGAGGGAGGTTTGTGATACACATAAAGGAAGGGATTTATGAAGAGAGAGTTAGGGTTCCGTTGAAGAAGAGGAATGTGGTGTTTTTGGGTGATGGAATGGGGAAGACTGTGATAACGGGTTCTGCTAGCGTGGGGCTGCAGCCTGGAATGACAACTTACAACTCTGCCACCGTCGGGGTTGATGGGGATGGGTTCATGGCAAAGGATCTCACAATCCAAAACACAGCCGGTCCAAATGCACACCAAGCAGTAGCATTCAGATCAGACAGTGATCTCTCTGTGATTGAGAATTGTGAATTCATAGGCAATCAAGATACTCTATATGCTCATTCCCTACGCCAATTCTACAAATCATGCCGTATCATTGGCAATGTAGACTTCATCTTTGGAAACTCAGCTTCAATCTTCCAAGACTGTCAAATCTTAGTCCGGCCCAGGCAAGTCAGGCCAGAAAAGGGTGAAAGCAATGCGATAGCAGCACATGGCAGGACAGACCCTGCTCAATCAACAGGCTTTGTTTTCCACAACTGCTTGGTTAATGGAACTGAGGAATATATGGCATTGTATTATAGCAAGCCTAAAGTACACAAGAACTATCTTGGTAGGCCTTGGAAAGAGTATTCAAGAACACTTTTCATTCATTCTTTATTGGAAGCTCTTATCACACCACAGGGTTGGATGCCATGGGGTGGTGGTGACTTTGCACTGAAGACACTTTACTATGGGGAATTTGAGAACTCGGGACATGGTTCTAATCTGACTCAGAGAGTGCCCTGGAGTAGCAAGGTCCCGGCTGAGCATGTGTTTTCGTATTCAGTACAGAGTTTCATTCAAGGAAATGATTGGATTCCATCATCTCAGTAA 1638 0.489 MRKPISISISTTFILILSMTSLLSLSLLFFLSLSPISLSQQQQPPSPHIHQACKATRFPHHCISTLSQSTLPSTPLHFIHFATSATIHNLHIAKSMLNSLLPSYPTAAESCLQILNYSHHRTSLAADALARGRTKDARAWMSAALSYQYGCWSGLKYVNHTALVSETMSFLDNLVSLTSNALSMIVSYDIFGNDTVLWTPPRTERDGFWEPALGSGSEFRAGLPVLEADAVVCKGGGSGCYKTVQEAVNAAPERAVGERGRFVIHIKEGIYEERVRVPLKKRNVVFLGDGMGKTVITGSASVGLQPGMTTYNSATVGVDGDGFMAKDLTIQNTAGPNAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSASIFQDCQILVRPRQVRPEKGESNAIAAHGRTDPAQSTGFVFHNCLVNGTEEYMALYYSKPKVHKNYLGRPWKEYSRTLFIHSLLEALITPQGWMPWGGGDFALKTLYYGEFENSGHGSNLTQRVPWSSKVPAEHVFSYSVQSFIQGNDWIPSSQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0731 545 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 185 IPR035513 -
Lal17g0731 545 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 187 IPR035513 -
Lal17g0731 545 SUPERFAMILY Pectin lyase-like 228 543 IPR011050 -
Lal17g0731 545 Pfam Pectinesterase 229 538 IPR000070 GO:0030599|GO:0042545
Lal17g0731 545 PANTHER PECTINESTERASE 34 543 - -
Lal17g0731 545 SMART PMEI_2 44 184 IPR006501 GO:0004857
Lal17g0731 545 CDD PMEI-like_3 52 185 - -
Lal17g0731 545 Pfam Plant invertase/pectin methylesterase inhibitor 49 184 IPR006501 GO:0004857
Lal17g0731 545 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 185 IPR006501 GO:0004857
Lal17g0731 545 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 34 543 - -
Lal17g0731 545 Gene3D - 225 545 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0731 Lal-Chr17 5182271 5186395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0731 48 540 Carbohydrate Esterase AT5G09760 63.976 0.0 654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0731 17 5182271 5186395 Lal17g0731 17 5182271 5186395 ECH
Lal14g1372 14 15109715 15113251 Lal17g0731 17 5182271 5186395 PCT
Lal19g0941 19 13408876 13412687 Lal17g0731 17 5182271 5186395 PCT
Lal17g0731 17 5182271 5186395 Lal14g1372 14 15109715 15113251 PCT
Lal17g0731 17 5182271 5186395 Lal19g0941 19 13408876 13412687 PCT