Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0728 ATGGCTCCTGCCACATCATCACAATCACCGTCGGCGTCTCAGAGGCACGTCGGCTTCATACGCCGCACGCAGGCGCCGCAGCTCCTTTCTCCTCCGTCGCCGGAGTTGTCATTGCCGCCGTGGTTGATGTGCGAGTCGTTGATTGAGGTAATGGTGACGGCGGATTACGAATTGGTGGAGAGCGACAATTATAGCGACCTGAGCTGCGAGAAATGCGGCTCCGGTGAGTTGCCGGAAGAGCTGCTTCTGTGCGATAAATGCGACAAAGGATTCCATATGAAATGTTTGAGGCCAATCGCGGTTAGAATTCCGATTGGATCGTGGTTTTGCCCTAAGTGTTCGGGACAGAAAGTGAAACGAGTTAGAAGTTTCTCTCAGAAGAAGATATATGATTTTTTTGGGATTCAGGTTGATCCTAATGTTCGAGCTTCTTCTCAAGATGCTAAGAGGCGCAAGAGACGTTCTGGACCTCTGACAGTACAGAAGAAAAAGAGAAGAATATTACCATTTGTTCCTTCAGAAGATCCTGCCCAGAGACTGAAACAGATGGCTTCTCTTGCTTCTGCTTTAACAGCATTAAATATCGAATTCAGTGATAACCTCACTTACTTGCCCGGAATGGCTCCTAGATCTGCTAATGAAGCCAGCTTAGAAAGTGGTGGAATGCAGGCTCTTACCAAGGAGGATACTGGAACTATGGAGCATTGCAAAGCTATGTGCAAAAGAGGCGAATGCCCTCCTTTCGTAGTTGTTTTTGATTCATGGGAAGGCTATACTGTGGAGGCTGATGGCCCAATAAAGGATATGACATTCATTGCGGAATACACTGGCGATGTGGATTACCTGAAGAATCGGGAACACGATGATTGCGATAGCATGATGACCCTTCTTTTACCATCAGAGTCTGCCCATAATCTTGTCATTTGTGCAGACAAACGTGGAAATATTGCTCGCTTCATTAGTGGCATAAACAATCATACTCAGGAAGGTAAGAAGAAGCTGAACTGCAAATGTTTAAGGTACAGGGTTAATGGGGAATCCAGGGTCTTTTTGGTCACGACTCGCGATATTGCTAAGGGGGAGAGGCTTTATTATAACTATAATGGTTATGAGGATGAATACCCAACTCACCATTTTGTGTGA 1143 0.4611 MAPATSSQSPSASQRHVGFIRRTQAPQLLSPPSPELSLPPWLMCESLIEVMVTADYELVESDNYSDLSCEKCGSGELPEELLLCDKCDKGFHMKCLRPIAVRIPIGSWFCPKCSGQKVKRVRSFSQKKIYDFFGIQVDPNVRASSQDAKRRKRRSGPLTVQKKKRRILPFVPSEDPAQRLKQMASLASALTALNIEFSDNLTYLPGMAPRSANEASLESGGMQALTKEDTGTMEHCKAMCKRGECPPFVVVFDSWEGYTVEADGPIKDMTFIAEYTGDVDYLKNREHDDCDSMMTLLLPSESAHNLVICADKRGNIARFISGINNHTQEGKKKLNCKCLRYRVNGESRVFLVTTRDIAKGERLYYNYNGYEDEYPTHHFV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0728 380 CDD PHD_RSF1 69 113 - -
Lal17g0728 380 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 48 378 - -
Lal17g0728 380 Pfam SET domain 279 368 IPR001214 GO:0005515
Lal17g0728 380 ProSiteProfiles SET domain profile. 246 368 IPR001214 GO:0005515
Lal17g0728 380 PANTHER HISTONE ACETYLTRANSFERASE 48 378 - -
Lal17g0728 380 Pfam PHD-finger 69 114 IPR019787 -
Lal17g0728 380 SMART PHD_3 68 114 IPR001965 -
Lal17g0728 380 SUPERFAMILY FYVE/PHD zinc finger 52 121 IPR011011 -
Lal17g0728 380 ProSitePatterns Zinc finger PHD-type signature. 69 113 IPR019786 -
Lal17g0728 380 CDD SET_ATXR5_6-like 243 380 - -
Lal17g0728 380 Gene3D SET domain 151 380 IPR046341 -
Lal17g0728 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 133 IPR013083 -
Lal17g0728 380 SUPERFAMILY SET domain 235 369 IPR046341 -
Lal17g0728 380 ProSiteProfiles Zinc finger PHD-type profile. 66 116 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0728 Lal-Chr17 5162795 5166680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0728 69 113 C2H2 Transcription Factor Family AT3G01460 46.667 2.49e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal17g0728 SET 2.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0728 K24406 - gmx:100785817 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0728 17 5162795 5166680 Lal17g0728 17 5162795 5166680 ECH
Lal17g0728 17 5162795 5166680 Lal21g0658 21 5068732 5072779 LSH