Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0727 ATTGGGATCCTAATCCTATTGATGGTTTCCAACGTGCAAAACACTGTTGTTATAGGTTGTTTTGTGGAGCTGGAGGTTGATTCCTCGTACTTGGTCCCTGCTAGTTATAGTGGACAAGATATGCTGATCTCTAATGAAGAAGACAGTGATGTGTTCTTTGACTCGGTGGATTATTTGTCACCTCTTCAAGAGTTTGGTTATAAGGTTTGGGTGAATGAGCCTCTTAGTGTGAAGGAAAGAAGGGAGAAGTTTTCACAATGGATGGGTTTAGTTGATGGTACTTCAAAGGTTTGTTTGCAAGAGAAAATGGTGACCTTTGATGAATCTTCAATAAGTTTGGAGAAAATGGTCAAGGATTGCAATGGAGCAGTGTCAAATGCTTGCATTGTAATTGATGATCAAGTTCCAGAGAAATTGATTACCTCAGAATGTGAAGAAACTTCTGAAGCACAAGTCTTGTTTAATGAACTCAAAGGGTGCCAAGACCAAGATGATAAAACTGATGCAAGTTTTCAAGGGAAGTTGTCTGAGCCTTCTTCAGATCAAGAGCACAGAGATAGAGAAACCGAGGCTGTAGAAGAATTTAAGGACTTTGAAATTTGTAAGAAGAAAAATAAAAATTGGTGGGCACGCTTTATAAACATCAGAAAAGGAGGTAAAGGGAAAGATAGAACAAAACAGAATACAAGGACAAGTAGAAGTGGTAGAATACATGTAAGACAGAACAAGAAGAAGTGGATGGAATTAAGTGCACTGTACATTGGACAAGAGATTAGAGCACACAAAGGACTGATCTGGACTATGAAATTCAGTCACAGTGGCAATTATCTAGCTAGTGGAGGTGAAGACAGTGTTGTACGCATATGGCGTGTAGTATCAATGGAAACATCGAGTTTTCGCTTCAGTGCAGAAGACAGCATTGTTAGCAAAGTGAAACATGACATCTCTTGTTCTCAGAGGAAAAACTCTAGCAATTCTTTAAATGTTCTTCCAAACAAGATTTTACAAATTGAGGATTCACCACTGCAAGAATTTTATGGTCATTCCGGCGATGTCTTGGATTTAGCTTGGTCTAGTTCAGATATTCTCCTTTCATCTTCTACGGATAAAACTGTTCGCTTATGGCAAATTGGTTATAATGAATGCCTTAATGTTTTCCATCACAAGGACTACGTGACATCCATTCAATTCAACCCTGTTGATGAGAATTACTTCATCAGTGGGTCCATAGACGGAAAAGCCCGAATATGGAGGGTAAATGAAGAGCGCGTAGTTGACTGGGCAGACATACGAGATGTCATAACTGCTATAAGTTACCAGCCAGATGGAAAGGGGTTCGTAGTTGGTACCCTTACAGGCACTTGTCGCTTTTTTATTGCTTCAGGCAAATATTTCCAGCTAGATACACAGATTTGTGTCGATCGGAGAAAGCGAACTTCTGGCAACAAGATCACTGGCATTCAGTTTTCCCAGAAAAACCATAAGAGAATTATGATCACCTCAGGAGATTCCAAAGTTAGAATATTTGAAGGCGTTGAACTTGTTCAGACATACAAAGGCCTTCCGAAATCGGGAAGTCAGATGTCTGGTTCATTCACATCAACTGGAAAACATTTTATTTCTGTTGGAGACGACTCTCGTATTTATATGTGGAACTTCAATGAGTTAGGAAATGCTTTTTCCAAACACAAAAAATCTAAGTATTCCTGCGAATACTTTTCCTCCAAGGGCGTCACCGTGGCAATACCTTGGTCAGGCATGAACGCAAGCTCTCGGTATAGTTCTTCACGCTTTTCTTCAGAAATGCAACCTCGGTTAGAGGCTGTTCCTTGGGCTAGAGAGTCAAAACGATTTTCTTTTCGCAGTTGGTTCTCAATCGACAGTACATGCCAAGGTTCTATGACATGGCCAGAGGAGAAGTTTCTCAATTGGGATTTACCTTTGACCGATGATGAATTCGATTACAAGCAGTTATATGTAAAAGATCCTAGCCATGACAATTGTGTATCAGAAACATGGGGACTATCAATTGTTGCAGCTGGTTGTGATGGAACTATCAAGACATTCCATAACTTTGGATTTCCTGTTAGGCTTTAA 2097 0.3991 IGILILLMVSNVQNTVVIGCFVELEVDSSYLVPASYSGQDMLISNEEDSDVFFDSVDYLSPLQEFGYKVWVNEPLSVKERREKFSQWMGLVDGTSKVCLQEKMVTFDESSISLEKMVKDCNGAVSNACIVIDDQVPEKLITSECEETSEAQVLFNELKGCQDQDDKTDASFQGKLSEPSSDQEHRDRETEAVEEFKDFEICKKKNKNWWARFINIRKGGKGKDRTKQNTRTSRSGRIHVRQNKKKWMELSALYIGQEIRAHKGLIWTMKFSHSGNYLASGGEDSVVRIWRVVSMETSSFRFSAEDSIVSKVKHDISCSQRKNSSNSLNVLPNKILQIEDSPLQEFYGHSGDVLDLAWSSSDILLSSSTDKTVRLWQIGYNECLNVFHHKDYVTSIQFNPVDENYFISGSIDGKARIWRVNEERVVDWADIRDVITAISYQPDGKGFVVGTLTGTCRFFIASGKYFQLDTQICVDRRKRTSGNKITGIQFSQKNHKRIMITSGDSKVRIFEGVELVQTYKGLPKSGSQMSGSFTSTGKHFISVGDDSRIYMWNFNELGNAFSKHKKSKYSCEYFSSKGVTVAIPWSGMNASSRYSSSRFSSEMQPRLEAVPWARESKRFSFRSWFSIDSTCQGSMTWPEEKFLNWDLPLTDDEFDYKQLYVKDPSHDNCVSETWGLSIVAAGCDGTIKTFHNFGFPVRL 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0727 698 PANTHER WD REPEAT DOMAIN 44 41 698 IPR040324 -
Lal17g0727 698 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 345 377 - -
Lal17g0727 698 Gene3D - 244 594 IPR015943 GO:0005515
Lal17g0727 698 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 299 IPR001680 GO:0005515
Lal17g0727 698 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 385 IPR001680 GO:0005515
Lal17g0727 698 MobiDBLite consensus disorder prediction 164 188 - -
Lal17g0727 698 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 427 IPR001680 GO:0005515
Lal17g0727 698 SMART WD40_4 469 510 IPR001680 GO:0005515
Lal17g0727 698 SMART WD40_4 420 459 IPR001680 GO:0005515
Lal17g0727 698 SMART WD40_4 251 290 IPR001680 GO:0005515
Lal17g0727 698 SMART WD40_4 379 418 IPR001680 GO:0005515
Lal17g0727 698 SMART WD40_4 511 552 IPR001680 GO:0005515
Lal17g0727 698 SMART WD40_4 338 376 IPR001680 GO:0005515
Lal17g0727 698 Pfam WD domain, G-beta repeat 341 375 IPR001680 GO:0005515
Lal17g0727 698 Pfam WD domain, G-beta repeat 257 289 IPR001680 GO:0005515
Lal17g0727 698 Pfam WD domain, G-beta repeat 381 417 IPR001680 GO:0005515
Lal17g0727 698 SUPERFAMILY WD40 repeat-like 254 688 IPR036322 GO:0005515
Lal17g0727 698 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 41 698 - -
Lal17g0727 698 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Lal17g0727 698 PRINTS G protein beta WD-40 repeat signature 363 377 IPR020472 -
Lal17g0727 698 PRINTS G protein beta WD-40 repeat signature 405 419 IPR020472 -
Lal17g0727 698 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 291 - -
Lal17g0727 698 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 385 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0727 Lal-Chr17 5148346 5152072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0727 342 549 U-box Gene Family AT2G33340 25.463 5.71e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0727 K20241 - gmx:100780979 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0727 17 5148346 5152072 Lal17g0727 17 5148346 5152072 ECH
Lal17g0727 17 5148346 5152072 Lal21g0657 21 5027501 5031230 LSH
Lal17g0727 17 5148346 5152072 Lal4g0619 4 4568558 4578994 LSH
Lal19g0936 19 13379921 13384245 Lal17g0727 17 5148346 5152072 PCT
Lal17g0727 17 5148346 5152072 Lal19g0936 19 13379921 13384245 PCT