Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal17g0727 | ATTGGGATCCTAATCCTATTGATGGTTTCCAACGTGCAAAACACTGTTGTTATAGGTTGTTTTGTGGAGCTGGAGGTTGATTCCTCGTACTTGGTCCCTGCTAGTTATAGTGGACAAGATATGCTGATCTCTAATGAAGAAGACAGTGATGTGTTCTTTGACTCGGTGGATTATTTGTCACCTCTTCAAGAGTTTGGTTATAAGGTTTGGGTGAATGAGCCTCTTAGTGTGAAGGAAAGAAGGGAGAAGTTTTCACAATGGATGGGTTTAGTTGATGGTACTTCAAAGGTTTGTTTGCAAGAGAAAATGGTGACCTTTGATGAATCTTCAATAAGTTTGGAGAAAATGGTCAAGGATTGCAATGGAGCAGTGTCAAATGCTTGCATTGTAATTGATGATCAAGTTCCAGAGAAATTGATTACCTCAGAATGTGAAGAAACTTCTGAAGCACAAGTCTTGTTTAATGAACTCAAAGGGTGCCAAGACCAAGATGATAAAACTGATGCAAGTTTTCAAGGGAAGTTGTCTGAGCCTTCTTCAGATCAAGAGCACAGAGATAGAGAAACCGAGGCTGTAGAAGAATTTAAGGACTTTGAAATTTGTAAGAAGAAAAATAAAAATTGGTGGGCACGCTTTATAAACATCAGAAAAGGAGGTAAAGGGAAAGATAGAACAAAACAGAATACAAGGACAAGTAGAAGTGGTAGAATACATGTAAGACAGAACAAGAAGAAGTGGATGGAATTAAGTGCACTGTACATTGGACAAGAGATTAGAGCACACAAAGGACTGATCTGGACTATGAAATTCAGTCACAGTGGCAATTATCTAGCTAGTGGAGGTGAAGACAGTGTTGTACGCATATGGCGTGTAGTATCAATGGAAACATCGAGTTTTCGCTTCAGTGCAGAAGACAGCATTGTTAGCAAAGTGAAACATGACATCTCTTGTTCTCAGAGGAAAAACTCTAGCAATTCTTTAAATGTTCTTCCAAACAAGATTTTACAAATTGAGGATTCACCACTGCAAGAATTTTATGGTCATTCCGGCGATGTCTTGGATTTAGCTTGGTCTAGTTCAGATATTCTCCTTTCATCTTCTACGGATAAAACTGTTCGCTTATGGCAAATTGGTTATAATGAATGCCTTAATGTTTTCCATCACAAGGACTACGTGACATCCATTCAATTCAACCCTGTTGATGAGAATTACTTCATCAGTGGGTCCATAGACGGAAAAGCCCGAATATGGAGGGTAAATGAAGAGCGCGTAGTTGACTGGGCAGACATACGAGATGTCATAACTGCTATAAGTTACCAGCCAGATGGAAAGGGGTTCGTAGTTGGTACCCTTACAGGCACTTGTCGCTTTTTTATTGCTTCAGGCAAATATTTCCAGCTAGATACACAGATTTGTGTCGATCGGAGAAAGCGAACTTCTGGCAACAAGATCACTGGCATTCAGTTTTCCCAGAAAAACCATAAGAGAATTATGATCACCTCAGGAGATTCCAAAGTTAGAATATTTGAAGGCGTTGAACTTGTTCAGACATACAAAGGCCTTCCGAAATCGGGAAGTCAGATGTCTGGTTCATTCACATCAACTGGAAAACATTTTATTTCTGTTGGAGACGACTCTCGTATTTATATGTGGAACTTCAATGAGTTAGGAAATGCTTTTTCCAAACACAAAAAATCTAAGTATTCCTGCGAATACTTTTCCTCCAAGGGCGTCACCGTGGCAATACCTTGGTCAGGCATGAACGCAAGCTCTCGGTATAGTTCTTCACGCTTTTCTTCAGAAATGCAACCTCGGTTAGAGGCTGTTCCTTGGGCTAGAGAGTCAAAACGATTTTCTTTTCGCAGTTGGTTCTCAATCGACAGTACATGCCAAGGTTCTATGACATGGCCAGAGGAGAAGTTTCTCAATTGGGATTTACCTTTGACCGATGATGAATTCGATTACAAGCAGTTATATGTAAAAGATCCTAGCCATGACAATTGTGTATCAGAAACATGGGGACTATCAATTGTTGCAGCTGGTTGTGATGGAACTATCAAGACATTCCATAACTTTGGATTTCCTGTTAGGCTTTAA | 2097 | 0.3991 | IGILILLMVSNVQNTVVIGCFVELEVDSSYLVPASYSGQDMLISNEEDSDVFFDSVDYLSPLQEFGYKVWVNEPLSVKERREKFSQWMGLVDGTSKVCLQEKMVTFDESSISLEKMVKDCNGAVSNACIVIDDQVPEKLITSECEETSEAQVLFNELKGCQDQDDKTDASFQGKLSEPSSDQEHRDRETEAVEEFKDFEICKKKNKNWWARFINIRKGGKGKDRTKQNTRTSRSGRIHVRQNKKKWMELSALYIGQEIRAHKGLIWTMKFSHSGNYLASGGEDSVVRIWRVVSMETSSFRFSAEDSIVSKVKHDISCSQRKNSSNSLNVLPNKILQIEDSPLQEFYGHSGDVLDLAWSSSDILLSSSTDKTVRLWQIGYNECLNVFHHKDYVTSIQFNPVDENYFISGSIDGKARIWRVNEERVVDWADIRDVITAISYQPDGKGFVVGTLTGTCRFFIASGKYFQLDTQICVDRRKRTSGNKITGIQFSQKNHKRIMITSGDSKVRIFEGVELVQTYKGLPKSGSQMSGSFTSTGKHFISVGDDSRIYMWNFNELGNAFSKHKKSKYSCEYFSSKGVTVAIPWSGMNASSRYSSSRFSSEMQPRLEAVPWARESKRFSFRSWFSIDSTCQGSMTWPEEKFLNWDLPLTDDEFDYKQLYVKDPSHDNCVSETWGLSIVAAGCDGTIKTFHNFGFPVRL | 698 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal17g0727 | 698 | PANTHER | WD REPEAT DOMAIN 44 | 41 | 698 | IPR040324 | - | |
| Lal17g0727 | 698 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 345 | 377 | - | - | |
| Lal17g0727 | 698 | Gene3D | - | 244 | 594 | IPR015943 | GO:0005515 | |
| Lal17g0727 | 698 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 258 | 299 | IPR001680 | GO:0005515 | |
| Lal17g0727 | 698 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 345 | 385 | IPR001680 | GO:0005515 | |
| Lal17g0727 | 698 | MobiDBLite | consensus disorder prediction | 164 | 188 | - | - | |
| Lal17g0727 | 698 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 385 | 427 | IPR001680 | GO:0005515 | |
| Lal17g0727 | 698 | SMART | WD40_4 | 469 | 510 | IPR001680 | GO:0005515 | |
| Lal17g0727 | 698 | SMART | WD40_4 | 420 | 459 | IPR001680 | GO:0005515 | |
| Lal17g0727 | 698 | SMART | WD40_4 | 251 | 290 | IPR001680 | GO:0005515 |
Showing 1 to 10 of 23 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal17g0727 | K20241 | - | gmx:100780979 | 874.004 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal17g0727 | 17 | 5148346 | 5152072 | Lal17g0727 | 17 | 5148346 | 5152072 | ECH | |
| Lal17g0727 | 17 | 5148346 | 5152072 | Lal21g0657 | 21 | 5027501 | 5031230 | LSH | |
| Lal17g0727 | 17 | 5148346 | 5152072 | Lal4g0619 | 4 | 4568558 | 4578994 | LSH | |
| Lal19g0936 | 19 | 13379921 | 13384245 | Lal17g0727 | 17 | 5148346 | 5152072 | PCT | |
| Lal17g0727 | 17 | 5148346 | 5152072 | Lal19g0936 | 19 | 13379921 | 13384245 | PCT |
Showing 1 to 5 of 5 entries