Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0724 ATGTATGCTTCTACTTCCTTTACTTCACCCTTCCTCCATAACCTTCTTCTTCAGAACTTCAACTCAAGAAGGTTACTCCACACCTCACTTAAACCACTCAACTCAGTTAACCCCACAACTTCCACAAATATCCACAACTCAACACAATCTGGTAATAATTTTGATGCAAATGTTGTTATGGTACTCTCAGTCTTATTATGTGCTCTAATTTGCTCACTTGGTTTAAACACCATCATAAGATGTGCATTAAGGTGTTCTAATTCAGTTGTCAATCACTCATCAACCACCAATACTTATACTCCAACTATGATACCTAACACAGGAATAAAGAAGAAAGCACTCAAAACTTTCACCATAGTAAGTTACTCAGCTGAGTTAAACCTTCCAAGTTTGGACTCAGAGTGTATGATATGTCTTTCGGAGTTTGTAAATGGTGATAAGGTGAGAATTTTGCCAAAGTGTAACCATGGTTTTCATGTAAGATGCATTGATAAATGGCTTAGTTCACACTCTTCTTGCCCTAAGTGTAGACAGTGCCTTATTGAGACTTGTGAAAAGATTATTGGGTGCACCAGAACGCAAGAAACCTCATCATTCCAACAACCTATATTGCTTGTGCCTGAAACAATTGTAACCATAGTACCATTAGAGCCAGAAGGTTTGGTTCGTAACTATAGGGAAGTTAGTTAA 690 0.3768 MYASTSFTSPFLHNLLLQNFNSRRLLHTSLKPLNSVNPTTSTNIHNSTQSGNNFDANVVMVLSVLLCALICSLGLNTIIRCALRCSNSVVNHSSTTNTYTPTMIPNTGIKKKALKTFTIVSYSAELNLPSLDSECMICLSEFVNGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCEKIIGCTRTQETSSFQQPILLVPETIVTIVPLEPEGLVRNYREVS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0724 229 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Lal17g0724 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 181 IPR013083 -
Lal17g0724 229 CDD RING-H2_PA-TM-RING 134 177 - -
Lal17g0724 229 SUPERFAMILY RING/U-box 114 182 - -
Lal17g0724 229 PANTHER RING-H2 FINGER PROTEIN ATL78 1 228 IPR044602 GO:0016567|GO:0016740
Lal17g0724 229 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 228 - -
Lal17g0724 229 Pfam Ring finger domain 134 177 IPR001841 -
Lal17g0724 229 SMART ring_2 135 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0724 Lal-Chr17 5117173 5117862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0724 22 195 C3H Transcription Factor Family AT3G10910 41.341 3.51e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0724 K19040 - gmx:100807227 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0724 17 5117173 5117862 Lal4g0616 4 4538163 4538840 LSH
Lal14g1363 14 15062742 15063416 Lal17g0724 17 5117173 5117862 PCT
Lal7g0808 7 14823609 14824630 Lal17g0724 17 5117173 5117862 PCT
Lal19g0932 19 13311265 13311933 Lal17g0724 17 5117173 5117862 PCT
Lal17g0724 17 5117173 5117862 Lal14g1363 14 15062742 15063416 PCT
Lal17g0724 17 5117173 5117862 Lal7g0808 7 14823609 14824630 PCT
Lal17g0724 17 5117173 5117862 Lal19g0932 19 13311265 13311933 PCT