Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0707 ATGGATTCCAACGATTTCCGTTCAATATTGGATTCTTCGGGCGTCGACGTGTGGTCGTTCATCGACACCGCAATCGCCGTCGCCGCGACGGATTCCGGCGATGAGCTGAAGCGCCGGAGAGACGCTATCGTCGAGAGGCTCTACTCCGCCACCACTGCTCCTCCGCGGTGCCGGAATTGCGACGGAGGCAACCGTAGTGTCGTCACTACCAACAGCGACCGAGTTAGGAAACAACAGAGGACCCGTAGCCCTAGCCCTAAACGACAATCACCACAACGCGAGCAACGACGTCGTTTCGCCTCTTCCCCCGAAACGCCACAGTCTCTTGAAAACGACAACGATGACGAAGAAAACGACACTGATTTGGATCCTTACGGTGGCTTGTTCGATGATGAACAGAAGAAGATTCTGGAAATTAAGGAGCAGCTGGAAGAACCTGATCAGTCTGAAGATTCATTGGTGGATTTGCTTCAAAATCTCGTGGATATGGATATTACATTCCAAGCTCTGAAGGAAACTGACATTGGTAGGTACGTGAATCGGTTGAGGAAGCATTCGTCTAATGACATTCGCAGATTGGTGAAGCTACTTGTCAGGAAGTGGAAGGAAACTGTAGATGAGTGGGTGAAGTCAAATCCACAGGGAGAAGCTGCTACTCTTATGGCTGATGGAGACTCTTCCCCTCTTCAGAAAACCACCCAAAATGGGCATCATCATATTCCTGATTTTGCTTACTCACCGAATCCACACAATGGGAGTTCTGGGTCTGACCGTAATGAAGCAGAGCTGAAACCAAAACCGAAAGTGATTCCTTCTCGCAGAGAAGCACCACCTCCAAGACCAATTCCACCACCTTTACTTCATACCCCTGCTCCTTCTGCCCTTCAAAACAAACAGAAAAAACTGGAAGAAAGCAATTTTGATGCGGAGAAACTTGCTTCTGCAAGAAAAAGGCTTCAAGCGAACTATAAAGAAGCTGAAAATGCCAAAAAGCAAAGGACAATTCAGGTTATGGACATTCATGAGTTACCAAAGTCAAAATCCAAGAATACCTTCTTTGGAAAGAACAAAGGCAGTGGCGGTTCTCATGGGAGGCACTGGTGA 1104 0.4801 MDSNDFRSILDSSGVDVWSFIDTAIAVAATDSGDELKRRRDAIVERLYSATTAPPRCRNCDGGNRSVVTTNSDRVRKQQRTRSPSPKRQSPQREQRRRFASSPETPQSLENDNDDEENDTDLDPYGGLFDDEQKKILEIKEQLEEPDQSEDSLVDLLQNLVDMDITFQALKETDIGRYVNRLRKHSSNDIRRLVKLLVRKWKETVDEWVKSNPQGEAATLMADGDSSPLQKTTQNGHHHIPDFAYSPNPHNGSSGSDRNEAELKPKPKVIPSRREAPPPRPIPPPLLHTPAPSALQNKQKKLEESNFDAEKLASARKRLQANYKEAENAKKQRTIQVMDIHELPKSKSKNTFFGKNKGSGGSHGRHW 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0707 367 MobiDBLite consensus disorder prediction 257 273 - -
Lal17g0707 367 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 134 215 IPR035441 -
Lal17g0707 367 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 367 IPR044790 -
Lal17g0707 367 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 130 218 IPR035441 -
Lal17g0707 367 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 367 - -
Lal17g0707 367 ProSiteProfiles TFIIS N-terminal domain profile. 131 208 IPR017923 -
Lal17g0707 367 Coils Coil 309 336 - -
Lal17g0707 367 MobiDBLite consensus disorder prediction 340 367 - -
Lal17g0707 367 MobiDBLite consensus disorder prediction 109 126 - -
Lal17g0707 367 MobiDBLite consensus disorder prediction 274 290 - -
Lal17g0707 367 CDD TFIIS_I 133 206 - -
Lal17g0707 367 Pfam TFIIS helical bundle-like domain 156 204 IPR017923 -
Lal17g0707 367 MobiDBLite consensus disorder prediction 216 306 - -
Lal17g0707 367 SMART TFS2_5 136 207 IPR003617 GO:0005634
Lal17g0707 367 MobiDBLite consensus disorder prediction 225 239 - -
Lal17g0707 367 MobiDBLite consensus disorder prediction 53 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0707 Lal-Chr17 4996202 5000646 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lal17g0707 Med26 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0707 - - aip:107622503 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0707 17 4996202 5000646 Lal17g0707 17 4996202 5000646 ECH
Lal17g0707 17 4996202 5000646 Lal21g0650 21 4970222 4973481 LSH
Lal17g0707 17 4996202 5000646 Lal4g0610 4 4473640 4476967 LSH
Lal7g0801 7 14792722 14794642 Lal17g0707 17 4996202 5000646 PCT
Lal19g0926 19 13274483 13276975 Lal17g0707 17 4996202 5000646 PCT
Lal17g0707 17 4996202 5000646 Lal7g0801 7 14792722 14794642 PCT
Lal17g0707 17 4996202 5000646 Lal19g0926 19 13274483 13276975 PCT