Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0703 ATGGATTTCGATGAATACGATTACTTGGAGAAGACAGTGGAGGAGAAAGACAACAACAACATCATCAAGAAAGATAACACTGAACGCAGTTACCGGAAGCGCGATGAATTCGACGACGACCACGACGCCAACGACAAGAAGAGCAAGAGGTCCCGTCGTGACGACGAGAATGGCAGCTCAAAGAAAGACGGCGACAACCGCGACCACAAGCGCTCCTCAGGTCGTGACAAGGAGCGCGACCGCGAACGTGAGCGTTCCTCCGGTCGCGACAAGGAGCGAGAGCGTGATCGTGAGCGTTCCTCTGGTCGCGACAAGGAGCGCCGCAGGGAGAGGGATAGGGAAGGAGATAAAGAGAGCGAGAGGAGTATCAGAGAGAAAGATAGGGAGAGGGAGAAGGATAGAGACAGAGAGAAAGAGAGGGATAGGAGAGAGAAAGATAAAGAGAAAGAGAGGGAGAAGTCGAGGGAGAGGAGAGAGAGGGAAAAGTCGAGGGAGGAGCGAGAGAGGTCGAGGAGGAGCAGGAGCCGTTCCGAGTTCAGAGATAAAGAATTGGAACCAGATTTCGAATCTAGAGATGGCCGGAGATATAGGGAAAAGAAGGAGGCTGTTGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCCTATCAGATGCCCTTAAAAGCAACAGAGAGGGATGTGTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGGGATGTTCGCTTGATCATGGATAGGAATTCGAGACGATCTAGAGGAGTTGGGCTAACATTTTCTTTGTATGAGTCAGATACATCGAAAGAAACTCAGCTTGATCAGTACATTGAATTTTATGATGCAATGTCAGTGCCCATGGCAATTGCTCTTTGTGGTCAACTCCTTCTTGGACAGCCTGTAATGGTTAAACCTTCTGAGGCTGAGAAGAACCTAGTTCAATCTAATGCTACTGGCGGAGCTGCTGGTGTAGTAGGACCATATGGAGCTGTCGACAGAAAACTGTATGTAGGAAACCTTCACTTCAGCATGACTGAAAGCCAGTTGAGAGAGATTTTTGAGTCATTTGGTCCAGTGGAGCTTGTACAGCTGCCTCTTGACCTGGAGACAGGACATTGCAAGGGTTTTGGGTTTATTCAATTTTCCCATCTTGAACATGCCAAGGCTGCTCAGACTATAAATGGAAAATTGGAGATTGCTGGCAGGACTATTAAGGTTTCATCCGTAACAGACCATGTTGGAAGCCAAGATACAACTGCAAAATCTGCTGACTTTGATGATGACGAAGGTGGACTTTCTTTGAATGCCCAATCAAGAGCAATGCTAATGCAAAAACTGGATCGCTCTGGCCTTGCTTCAAGCATTGGCTTACCCATTGTGAATGGGTCAGCTCCTGCTCAACAGGCTATTAGCTTGCCTATTGGTAATCCAGGTATGGTACCTGCTACAGTTCTCCCATCACAATTCATGCCTACCCCAGTGGCTGAACCTGTTGGAAACCCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCTATGACTGAGACAGAACCAGATTTTGATCTAGACATTAAAGATGATGTACAAGAAGAGTGTTCTAAACATGGGCGAGTGAAGCATATATATGTCGATAAAAGAAGTGCAGGTTTTGTGTATTTGCGGTTTGAGACAGTTGAAGCGGCAAGTGCTGCTCAACGTGAAATGCACAACCGGTGGTTTGCACGCAGATTGATTTCAGCTGTCTACATGGTAGGCATATAG 1767 0.4703 MDFDEYDYLEKTVEEKDNNNIIKKDNTERSYRKRDEFDDDHDANDKKSKRSRRDDENGSSKKDGDNRDHKRSSGRDKERDRERERSSGRDKERERDRERSSGRDKERRRERDREGDKESERSIREKDREREKDRDREKERDRREKDKEKEREKSRERREREKSREERERSRRSRSRSEFRDKELEPDFESRDGRRYREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSRGVGLTFSLYESDTSKETQLDQYIEFYDAMSVPMAIALCGQLLLGQPVMVKPSEAEKNLVQSNATGGAAGVVGPYGAVDRKLYVGNLHFSMTESQLREIFESFGPVELVQLPLDLETGHCKGFGFIQFSHLEHAKAAQTINGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLSLNAQSRAMLMQKLDRSGLASSIGLPIVNGSAPAQQAISLPIGNPGMVPATVLPSQFMPTPVAEPVGNPSECLLLKNMFDPMTETEPDFDLDIKDDVQEECSKHGRVKHIYVDKRSAGFVYLRFETVEAASAAQREMHNRWFARRLISAVYMVGI 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0703 588 CDD RRM1_RBM39_like 215 305 - -
Lal17g0703 588 CDD RRM3_RBM39_like 503 585 - -
Lal17g0703 588 Gene3D - 330 426 IPR012677 -
Lal17g0703 588 Coils Coil 144 173 - -
Lal17g0703 588 Gene3D - 207 318 IPR012677 -
Lal17g0703 588 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 427 522 IPR029123 -
Lal17g0703 588 SUPERFAMILY RNA-binding domain, RBD 334 584 IPR035979 GO:0003676
Lal17g0703 588 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 309 IPR000504 GO:0003723
Lal17g0703 588 SUPERFAMILY RNA-binding domain, RBD 207 314 IPR035979 GO:0003676
Lal17g0703 588 TIGRFAM SF-CC1: splicing factor, CC1-like family 89 586 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lal17g0703 588 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 585 - -
Lal17g0703 588 MobiDBLite consensus disorder prediction 15 212 - -
Lal17g0703 588 Gene3D - 500 587 IPR012677 -
Lal17g0703 588 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 412 IPR000504 GO:0003723
Lal17g0703 588 PANTHER CC1-LIKE SPLICING FACTOR 1 585 - -
Lal17g0703 588 SMART rrm1_1 505 583 IPR000504 GO:0003723
Lal17g0703 588 SMART rrm1_1 215 305 IPR000504 GO:0003723
Lal17g0703 588 SMART rrm1_1 335 408 IPR000504 GO:0003723
Lal17g0703 588 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 528 580 IPR000504 GO:0003723
Lal17g0703 588 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 258 IPR000504 GO:0003723
Lal17g0703 588 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 406 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0703 Lal-Chr17 4970998 4977449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0703 306 407 Eukaryotic Initiation Factors Gene Family AT4G34110 32.039 1.62e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0703 K13091 - gmx:100802446 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0703 17 4970998 4977449 Lal17g0703 17 4970998 4977449 ECH
Lal7g0797 7 14752652 14759917 Lal17g0703 17 4970998 4977449 PCT
Lal17g0703 17 4970998 4977449 Lal7g0797 7 14752652 14759917 PCT