Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0682 ATGTCCAGAGAAAGGGAGAGATTTGATGAGGTAGGCAACAAGATCAAGAGGGAAGGAAATGTTTCCTCTCAAATGGGAAGAAGACACATGTTGGGCCCTCCTGGAACCCTAAATACCATAACCCCTTGTGCAGCATGTAAGCTTTTGAGACGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAACCCCAAAAGTTTGCTTCAGTCCACAAAGTTTTTGGTGCTAGCAACGTCTCAAAGATGCTAATGGAGGTACCAGAATGTCAAAGAGCTGATGCAGCAAATAGTCTAGTATATGAGGCTAATGTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAACAAGTTCAATCTTTACAAGCTGAACTTAATGCAGTAAGATCAGAAATACTTAAATACAAACTCAGGGAAGTTAACATGATACCTTCTTCTCATGTTACAATGCTTCCTTCTTCTGTTGATGTTACAATAATTGCTCCATCTCCACCATTGCCACCTCCTCTTCCTCCAACTCCTTCCTCTTCTTCTTCCATGTATATCCAACAGAGGGTGCCCACAGATTATAGCAGAATTTCTAGTGATAATATTTCTTCCTATTTTGGTTAA 642 0.4128 MSRERERFDEVGNKIKREGNVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRSEILKYKLREVNMIPSSHVTMLPSSVDVTIIAPSPPLPPPLPPTPSSSSSMYIQQRVPTDYSRISSDNISSYFG 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0682 213 Coils Coil 121 148 - -
Lal17g0682 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 28 213 - -
Lal17g0682 213 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Lal17g0682 213 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Lal17g0682 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 28 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0682 Lal-Chr17 4835177 4836833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0682 27 170 AS2 family AT2G40470 83.108 7.85e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal17g0682 LOB 1.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0682 - - lang:109326265 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0682 17 4835177 4836833 Lal21g0634 21 4809798 4812052 LSH