Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0677 ATGGGAATTGTAAGTAACATAGGTTTCACTTCACTTACCAAAGTTCCTTTGTACACAAAACTACTTTCAAAGCATAGTTATCATAAATCACCATGCAGTGTTACAGTTCATAAACCTAACAACTACTCAATTAGGGTGAGTCAAACTCAAATCTGTTGTAAACTATCAGAAAAAGGGATTGAAGAGAACCCCTCAAGCAAGAGTAGTTCTAAATCTAAGGACAGAATGGAGGATTATAATATAGCTATGAAGAATATGATGAGGAACCCTTATGAGTATCACCATGATCTTGGTATGAATTACACACTTATAACTGATAATTTGATTGTGGGCTCCCAACCTCAGAAACCTGAAGATGTAGATCACCTAAAAAAGGAAGAGGGTGTGGCTTACATTCTAAACTTACAACAGGATAAGGATGTTGAATATTGGGGCATAGACTTGCAATCAATAATAAGAGAATGTCGTAAACTTGAAATTCGCCATATGAGGAATCCGGCGAAGGACTTCGATCCAAACTCCTTGCGAAGTGCACTCCCTAAAGCAGTCTCATCCTTGGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGCACTGCTGGACTTGGTAGAGCTCCAGCAGTGGCAATTGCTTACTTGTTCTGGTTTTGCGCCATGAATCTAAATACAGCGTATGACACGCTAACTTCAAAGAGACCATGTGGACCAAATAAAAGTGCAATACGTGGAGCTACTTATGATTTGGCTAAGAATGATCCATGGAAAGAGCCATTTGAGAGTCTTCCAGAATATGCATTTGAAGATATAGCAGACTGGGAGAGGAACTTGATTCAAGATCGCGTCCGTTCCCTTCGTGGAACTTGA 873 0.3975 MGIVSNIGFTSLTKVPLYTKLLSKHSYHKSPCSVTVHKPNNYSIRVSQTQICCKLSEKGIEENPSSKSSSKSKDRMEDYNIAMKNMMRNPYEYHHDLGMNYTLITDNLIVGSQPQKPEDVDHLKKEEGVAYILNLQQDKDVEYWGIDLQSIIRECRKLEIRHMRNPAKDFDPNSLRSALPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFCAMNLNTAYDTLTSKRPCGPNKSAIRGATYDLAKNDPWKEPFESLPEYAFEDIADWERNLIQDRVRSLRGT 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0677 290 Gene3D Protein tyrosine phosphatase superfamily 83 290 IPR029021 -
Lal17g0677 290 ProSiteProfiles Dual specificity protein phosphatase domain profile. 100 257 IPR020422 GO:0006470|GO:0008138
Lal17g0677 290 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 177 236 IPR000387 GO:0016311|GO:0016791
Lal17g0677 290 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 7 290 - -
Lal17g0677 290 Pfam Dual specificity phosphatase, catalytic domain 121 242 IPR000340 GO:0008138|GO:0016311
Lal17g0677 290 SMART dsp_5 100 244 IPR020422 GO:0006470|GO:0008138
Lal17g0677 290 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 7 290 - -
Lal17g0677 290 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 97 243 IPR029021 -
Lal17g0677 290 CDD DSP_laforin-like 99 246 IPR045204 GO:0019203|GO:0046838
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0677 Lal-Chr17 4795771 4798638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0677 28 290 Protein tyrosine phosphatase (PTP) family AT3G10940 73.684 7.28e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0677 - - gmx:100805592 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0677 17 4795771 4798638 Lal17g0677 17 4795771 4798638 ECH