Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0667 ATGGCAATTGCAACAACCTCTACCATGTTTCTCCTTTTCTCTGTTCTTAATCTTTGCCTTCAAGGCACTTTTGGTGACTATGGTGGAGGATGGCAAGGTGGTCATGCTACATTTTATGGTGGTGGTGATGCATCCGGCACAATGGGAGGAGCTTGTGGTTATGGGAATTTATATAGTCAAGGTTATGGGACTAACACTGCAGCACTCAGCACTGCTCTATTCAACAATGGTTTGAGTTGTGGTTCTTGCTATGAGATGAAATGTAATAATGATGCAAGATGGTGTCTCCCTGGTAGCATCATTGTTACTGCCACAAATTTTTGTCCTCCAAACTTGGCTTTGTCTAATGACAATGGTGGATGGTGCAACCCTCCACTTCAGCACTTTGATCTGGCTGAGCCTGCTTTCTTGCAAATTGCTCAATACAAAGCAGGAATTGTTCCTGTTTCCTTCAGAAGGGTTTCTTGTGTGAAGAAAGGAGGAATAAGGTTCACAGTGAATGGCCACTCTTACTTCAACTTGGTTCTGATCACAAATGTCGGCGGCGTTGGAGATGTTCATTCTGTTTCCATCAAGGGTTCTAGGACTGGATGGCAAGCAATGTCAAGGAACTGGGGCCAAAACTGGCAGAGCAATTCCTATCTCAATGGCCAAAGCCTTTCATTTCAGGTCACTACAAGTGATGGAAGAACTATCACTAGCAACAATATTGCACCTGCTAATTGGCAATTTGGACAAACATATCAGGGAGGACAGTTTTAG 762 0.437 MAIATTSTMFLLFSVLNLCLQGTFGDYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCNNDARWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVSCVKKGGIRFTVNGHSYFNLVLITNVGGVGDVHSVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTITSNNIAPANWQFGQTYQGGQF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0667 253 Gene3D - 159 253 IPR036749 -
Lal17g0667 253 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Lal17g0667 253 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Lal17g0667 253 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Lal17g0667 253 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Lal17g0667 253 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Lal17g0667 253 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Lal17g0667 253 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Lal17g0667 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Lal17g0667 253 PANTHER EXPANSIN-A15 6 253 IPR002963 GO:0009664
Lal17g0667 253 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Lal17g0667 253 SUPERFAMILY Barwin-like endoglucanases 12 179 IPR036908 -
Lal17g0667 253 Pfam Lytic transglycolase 66 151 IPR009009 -
Lal17g0667 253 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Lal17g0667 253 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Lal17g0667 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Lal17g0667 253 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Lal17g0667 253 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Lal17g0667 253 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Lal17g0667 253 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Lal17g0667 253 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Lal17g0667 253 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Lal17g0667 253 PANTHER EXPANSIN 6 253 - -
Lal17g0667 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Lal17g0667 253 SMART dpbb_1 66 151 IPR007112 -
Lal17g0667 253 Gene3D - 21 156 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0667 Lal-Chr17 4719945 4721613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0667 10 253 Expansin Gene Family AT2G40610 82.731 1.63e-152 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0667 - K20628 cit:102577953 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0210 22 1296689 1298032 Lal17g0667 17 4719945 4721613 ECH
Lal5g1272 5 15443073 15446410 Lal17g0667 17 4719945 4721613 ECH
Lal3g0437 3 3033933 3036637 Lal17g0667 17 4719945 4721613 ECH
Lal17g0667 17 4719945 4721613 Lal17g0667 17 4719945 4721613 ECH
Lal17g0667 17 4719945 4721613 Lal21g0628 21 4730972 4732655 LSH
Lal17g0667 17 4719945 4721613 Lal4g0578 4 4211479 4213699 LSH