Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0663 ATGGCTCTTCAACATCCACAGCACCGCCTATTGCTTGACACAGATTCAAGATCAACTGCACCAGGGAATGCAAATAAGACAAGTGGGACTTTTGCAAGTAAAACAAAATTTGACACCAATATGGTGATTATCTTGGCAGCCTTGCTCTGTGCACTTATATGTGCTCTTGGACTCAACTCAATTGTACGTTGCGCTCTGCGGTGTATCCGCAGGCTCGCATTTGAGACACGAGATGAGAATGCAACTCGCTTGACATCGAAAGGACTAAAGAAGAAAGCATTGCATCAGATCCCTGTAGCTGTTTATGGTGCAGGTAGTGTTAGTATTGCAGCCACAGAATGTCCAATTTGCCTTGGGGAGTTTATGAATGGAGAGAAAGTTAGACTTTTACCAAAATGTCACCATGGTTTTCATGTGAGATGCATAGATACATGGCTTCTCTCACACTCCTCTTGCCCTATTTGTAGACAGTCTTTGCTTGACCATCCAACAAATTCTGATGCTGCAACTGTTGCTATTACTGTAACTGCAGCTGTAGGAACTAGTCATCATGTGGAGCATGTCTTAGAAAGACATGAACATGAACATGTAGATGTAGTTGTGGATGAGATTGGTTAA 618 0.4272 MALQHPQHRLLLDTDSRSTAPGNANKTSGTFASKTKFDTNMVIILAALLCALICALGLNSIVRCALRCIRRLAFETRDENATRLTSKGLKKKALHQIPVAVYGAGSVSIAATECPICLGEFMNGEKVRLLPKCHHGFHVRCIDTWLLSHSSCPICRQSLLDHPTNSDAATVAITVTAAVGTSHHVEHVLERHEHEHVDVVVDEIG 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0663 205 SUPERFAMILY RING/U-box 113 162 - -
Lal17g0663 205 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lal17g0663 205 SMART ring_2 114 155 IPR001841 -
Lal17g0663 205 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 7 200 - -
Lal17g0663 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 164 IPR013083 -
Lal17g0663 205 PANTHER RING-H2 FINGER PROTEIN ATL74 7 200 - -
Lal17g0663 205 Pfam Ring finger domain 113 156 IPR001841 -
Lal17g0663 205 CDD RING-H2_PA-TM-RING 113 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0663 Lal-Chr17 4700168 4700785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0663 9 164 C3H Transcription Factor Family AT3G10910 58.788 2.57e-62 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0663 - K19040 gmx:100787273 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0663 17 4700168 4700785 Lal4g0576 4 4188680 4189291 LSH