Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0661 ATGTCCTCAGAGGACATAGAAAACGGTCTCAACTCACCGCTCGTATTCCAAGACGCCCCTTTACGCTTCAATTCTGGTCCCCCACCTCGCCGCATCGATGACCCGGTTCCGAAAACCCGAGAACCCACCGTTTTCGTCGACGAAAAGATGTTCGCTATGGATCGTGACCGGTTCTTCGCGGCGCCGGGCGCCGAGTTCCGCCGCAATGTCTACGGCGATTGCTCCGGCCAACGTGACACTCCGGATGACCGAAATTGGAGCAGGAATGGAAGTAGCGGCGACGATTCGGATGATTCAGATGACGATGAAGATGATGATATTGATGATGATGTTGAAGGTGAAGTAGAAGATCTCGTTGGTAACAAGCGCAATTCCAACGCAATTGGTGAAATTAACAATAACAGTGGCAGTGGTGGTAATTTGGCTAGTGTTGCAAATGGGAAAACTCAGCACCACTCTCCTTATGTTTGTGGAAGAGAGTTATTGGTGAAAGATGGTGAAATTGGGCATTTAGTGCATAACAATGTGAGTGGTGGTGATGAAGATCATCAGAGAGAAAGGTTGGGTAAGTCTCAAAATGCTGTTGGTGTTGCTGAAACTGAGTGTGGGGAGTACTATTCTCAGTATCTTGAAGGTACAGAAGGGTCAGGTTCTGTGCAGAAAGTAATGGTAGATGATAATGGTTGTGGATTTAGTGGGAGAAAAGATGCTATGTATCTGGGCGAGTCGGGGGAGTCTTTGAGGGCAATCCTTTCAGATACTGTCACGGGAGCTCTTATGGATGATGCAATGATACTACCTTGTGGGCATTCATTTGGCGGAGGTGGAATACAACATGTTATTAGAATGGTGGGTTCTAAGCCATCAAATGCTATAATTTTCAGACTCATATTTTCTGTGACAAGTCATCTTAAAAATAAAGCTTGCTGCACTTGTTCTCAACCAACAACTGAGGAATCAATATCTCCAAACTTATCACTTCGAGCTGCTGTTCAGGCATACTGTCGGGAAGAGGAGTCACAATTTTACAGGGTATCCAAAAGAAAAAGAGAAAGATTTGATCAGGGTGGTTTTGGAGATTCAGCTGTTATGGAACCATCAAGGAGCAGAGGTGTTCAATTTCCATTTGCTGTGATGGACCGGGTTGTCATAAAGGGAAATAAAAGGACACCGCAACGCTTTGTTGGTCGTGAAGCTATTGTAACTACACAGTGCCTGAATGGATGGTATGTAGTGAAGACACTGGATAATGCAGAGAGTGTAAAATTGCAGTATCGTTCCCTTGCTAAGGTTTTGGATGATCCTTCAAAACCTGCCTCCAACAAGGTGGGACCTAATTGGCTATAG 1347 0.4529 MSSEDIENGLNSPLVFQDAPLRFNSGPPPRRIDDPVPKTREPTVFVDEKMFAMDRDRFFAAPGAEFRRNVYGDCSGQRDTPDDRNWSRNGSSGDDSDDSDDDEDDDIDDDVEGEVEDLVGNKRNSNAIGEINNNSGSGGNLASVANGKTQHHSPYVCGRELLVKDGEIGHLVHNNVSGGDEDHQRERLGKSQNAVGVAETECGEYYSQYLEGTEGSGSVQKVMVDDNGCGFSGRKDAMYLGESGESLRAILSDTVTGALMDDAMILPCGHSFGGGGIQHVIRMVGSKPSNAIIFRLIFSVTSHLKNKACCTCSQPTTEESISPNLSLRAAVQAYCREEESQFYRVSKRKRERFDQGGFGDSAVMEPSRSRGVQFPFAVMDRVVIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDPSKPASNKVGPNWL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0661 448 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 82 448 - -
Lal17g0661 448 MobiDBLite consensus disorder prediction 125 150 - -
Lal17g0661 448 MobiDBLite consensus disorder prediction 95 115 - -
Lal17g0661 448 ProSiteProfiles U-box domain profile. 246 341 IPR003613 GO:0004842|GO:0016567
Lal17g0661 448 MobiDBLite consensus disorder prediction 1 42 - -
Lal17g0661 448 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 82 448 - -
Lal17g0661 448 MobiDBLite consensus disorder prediction 77 94 - -
Lal17g0661 448 MobiDBLite consensus disorder prediction 69 150 - -
Lal17g0661 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 339 IPR013083 -
Lal17g0661 448 SUPERFAMILY RING/U-box 247 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0661 Lal-Chr17 4691162 4695004 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0661 191 448 Plant U-box Gene Family AT5G05230 56.604 1.55e-86 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0661 - - adu:107470194 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0661 17 4691162 4695004 Lal17g0661 17 4691162 4695004 ECH