Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0647 ATGGAAGCTCTTGTGTGCAGAGAATTAGGTGATCCAACAGTGTCTGTTGAAGACAAATCAAGCCCAATAATTGTATCGAAGAATCACCCAATTCCTCAACTCAATTCTCCAACTTCTGTAAGAGTCAGAGTCAAAGCCACAAGCTTGAATTTTGCCAATTACCTTCAGGTTTTGGGCAAGTACCAAGAGAAACCACCATTGCCATTCATCCCAGGATCCGATTTTTCTGGCTATGTTGATGCTGTTGGTCCCAAAGTTTCAAACTTTAAAATTGGGGACCCTGTTTGTTCCTTCGCTGCGCTTGGTTCTTATGCTGAATTCATTGTTGTTGATGAGACCCAGTTGTTTCAAGTGCCGGAAGGTTGTGATCTGGTTGCTGCTGGAGCACTTGCTGTAGCATCTGGTACTTCTCATGTTGCACTTGTTCATAGAGCTCAATTGAAGCCTGGTCAGGTGTTGCTGGTTTTGGGTGCCGCAGGAGGTGTAGGCCTTGCAGCTGTGCAGATTGGAAAAGCATGTGATGCCATTGTCATTGCTGTTGCTAGGGGAGCTGAAAAGGTGCAGCTTTTGAAATCGCTTGGTGTTGATCATGTGGTAGACTTGACCAGTGAAAATGTTATTCCTAGTGTCAAAGAGTTCCTCAAGACTAGAAAGCTTAAAGGGGTCGATGTGCTTTATGATCCGGTTGGAGGCAAGCTTACTAAAGAAAGTTTGAAGCTTCTCAACTGGGGAGCTAACATTCTGATAATTGGGTTTGCAAGTGGAGAAGTTCCGGTCATCCCTGTTAACATATCTCTTGTTAAGAATTGGACAGTGCATGGTCTCTATTGGGGTAGCTATAGAATACATCGACCTGACGTTCTTGACGATTCTCTGAAGGAGCTACTGTCTTGGTTGGCAAAAGGCTTGATTTCAATCAACATTTCACATTCTTATCGCCTGTCAGAGGCCAACCTTGCCTTTACTGCTATCAGAGATAGGAGAGCTATAGGAAAGGTGATGATTGTTTTTGATGAAAAATCTACAAGGTCTAAGCTATGA 1041 0.4361 MEALVCRELGDPTVSVEDKSSPIIVSKNHPIPQLNSPTSVRVRVKATSLNFANYLQVLGKYQEKPPLPFIPGSDFSGYVDAVGPKVSNFKIGDPVCSFAALGSYAEFIVVDETQLFQVPEGCDLVAAGALAVASGTSHVALVHRAQLKPGQVLLVLGAAGGVGLAAVQIGKACDAIVIAVARGAEKVQLLKSLGVDHVVDLTSENVIPSVKEFLKTRKLKGVDVLYDPVGGKLTKESLKLLNWGANILIIGFASGEVPVIPVNISLVKNWTVHGLYWGSYRIHRPDVLDDSLKELLSWLAKGLISINISHSYRLSEANLAFTAIRDRRAIGKVMIVFDEKSTRSKL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0647 346 Pfam Alcohol dehydrogenase GroES-like domain 38 97 IPR013154 -
Lal17g0647 346 Gene3D - 34 331 - -
Lal17g0647 346 Pfam Zinc-binding dehydrogenase 161 299 IPR013149 -
Lal17g0647 346 SMART PKS_ER_names_mod 19 335 IPR020843 GO:0016491
Lal17g0647 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 285 IPR036291 -
Lal17g0647 346 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 150 171 IPR002364 GO:0008270|GO:0016491
Lal17g0647 346 SUPERFAMILY GroES-like 26 151 IPR011032 -
Lal17g0647 346 CDD QOR1 1 335 - -
Lal17g0647 346 Gene3D - 133 280 - -
Lal17g0647 346 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 336 - -
Lal17g0647 346 PANTHER QUINONE OXIDOREDUCTASE-LIKE PROTEIN 2 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0647 Lal-Chr17 4610494 4613728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0647 68 266 Monolignol Biosynthesis Gene Families AT1G72680 24.576 1.07e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0647 K00344 - gmx:100817700 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0647 17 4610494 4613728 Lal17g0647 17 4610494 4613728 ECH