Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0627 ATGGGTTCAACCGGTGAGACCCAAATAACTCCAACCCATGTATCTGATGAAGAGGCAAACCTCTTCGCCATGCAACTAGCCAGTGCCTCAGTCCTACCCATGGTTCTGAAATCAGCCATTGAGCTAGATCTTTTAGAAATCATAGCAAAAGCTGGTCCTGGTGTTCATCTTTCACCTATTGATATTGCTTCTCACCTTCCAACAACAAACCCTGATGCACCAATCATGTTAGACCGCATGTTGCGCTTATTGGCTAGCTACAGTATCCTTACTTACTCACTACGCACTCTCCATGATGGAAAGGTTGAAAGGCTATATGGTTTGGCGCCTGTGGCTAAGTATTTGGTCAAGAATGAAGATGGTGTTTCTCTTTCTGCTCTTAACCTTATGAATCAAGATAAGGTCCTTATGGAAAGCTGGTACTACTTGAAAGATGCAGTCCTTAAAGGTGGGATTCCATTTAACAAGGCATATGGAATGACAGCCTTTGATTACCATGGCACAGATCCAAGATTCAACAAGGTTTTCAACAAGGGTATGTCTGATCACTCTACCATCACAATGAAGAAAATTCTTCAGACCTACACTGGCTTTCAGGGTCTTAAATCTCTTGTTGATGTTGGTGGTGGTACTGGTGCTGTAATCAATATGATTGTCTCAAAGTATCCCAATTTAAAGGGTATTAATTTTGATTTACCACATGTCATTGAAGATGCTCCATCTTATCCAGGAGTGGAAAATGTTGGTGGAGACATGTTTGTGAGTATTCCAAAGGCTGATGCTGTTTTTATGAAGTGGATTTGTCATGACTGGAGTGATGAGCACTGCTTGAAGTTCTTGAAGAACTGTTATGATGCATTACCAGAAAATGGTAAGGTAATTGTGGCTGAATGCATTCTTCCAGTGGCTCCAGACACTAGCTTGGCCACAAAGGGTGTGGTTCACATTGATGTGATCATGTTGGCTCATAACCCTGGTGGGAAAGAGAGAACAGAGGAAGAATTTGAGGCCTTGGCTAAGGGTGCTGGATTCAAAGGTTTTCGAGTTTTCGACAGTGCTTTCAACACCTACATCATGGAATTTCTCAAGAAAGTTTAA 1098 0.4199 MGSTGETQITPTHVSDEEANLFAMQLASASVLPMVLKSAIELDLLEIIAKAGPGVHLSPIDIASHLPTTNPDAPIMLDRMLRLLASYSILTYSLRTLHDGKVERLYGLAPVAKYLVKNEDGVSLSALNLMNQDKVLMESWYYLKDAVLKGGIPFNKAYGMTAFDYHGTDPRFNKVFNKGMSDHSTITMKKILQTYTGFQGLKSLVDVGGGTGAVINMIVSKYPNLKGINFDLPHVIEDAPSYPGVENVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYDALPENGKVIVAECILPVAPDTSLATKGVVHIDVIMLAHNPGGKERTEEEFEALAKGAGFKGFRVFDSAFNTYIMEFLKKV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0627 365 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
Lal17g0627 365 CDD AdoMet_MTases 204 295 - -
Lal17g0627 365 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Lal17g0627 365 PANTHER BNAA10G07270D PROTEIN 1 364 - -
Lal17g0627 365 SUPERFAMILY "Winged helix" DNA-binding domain 15 119 IPR036390 -
Lal17g0627 365 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171
Lal17g0627 365 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
Lal17g0627 365 PANTHER O-METHYLTRANSFERASE 1 364 IPR016461 GO:0008168
Lal17g0627 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 361 IPR029063 -
Lal17g0627 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 363 IPR016461 GO:0008168
Lal17g0627 365 Gene3D - 1 115 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0627 Lal-Chr17 4454344 4457729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0627 1 365 Monolignol Biosynthesis Gene Families AT5G54160 76.164 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0627 K13066 - gmx:100780100 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0627 17 4454344 4457729 Lal17g0627 17 4454344 4457729 ECH
Lal17g0627 17 4454344 4457729 Lal4g0543 4 3953502 3957397 LSH