Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0620 ATGTTAAAAATGGGTGATGTAGTGATGAATGGAGAGAAGTTGAAGTTAGTAGGAGTGGAGAAAGAAGAAGAGAGGATAAAAGAATTGAAGGGGTTGATGAAGTGGGAGAAGTTCTTACCAAAGATGGTGTTAAGGGTTCTGTTGGTTGAAGCTGATGATTCTACTAGGCAGATTATATCAGCTCTTCTAAGAAAATGCAGCTATAAAGTGGCTGCTGTTTCAGATGGCTTGAAGGCATGGGAAATACTCAAGGGAAGGCCACACAATATTGATCTAATACTCACAGAAGTGGATCTTCCATCCATATCTGGCTATGCACTTCTCACATTAATAATGGAGCATGATATTTGCAAAAACATCCCTGTCATAATGATGTCATCACAAGATTCGGTTAGCACGGTATACAAATGCATGTTGAGAGGTGCTGCTGACTATCTTGTTAAGCCCCTTAGAAAAAATGAACTAAAGAATTTGTGGCAGCATGTTTGGAGAAGACAATCGTCAACCATTGGTGTGAGTGGCTCCCAAGAAGAGAGTGCTTCACAGCAGAAAGTTGAAGTCACTGCTGAAAACAATGCTACCAGTAATCGTTCAATTGGTGGTGGTGCTTCCATCAAGAGAAATAAGGAACTGATTGAGAAAGGAAGTGATGCACATAACACCAAATGCATATTGTTTTCCAGGGCATATTTGTCTAGTTCTAGCTCTTGTACAAAGCCCGACTTGGAAGTTGAGAGTGACCCTGTTGAAACCTTGAGGGAATCATCTCCGCTGACATGTGGTGAAGCATGTCCAAGTGGAACAAATATACAAGAGGTTGAAACATGCATTCGTTTAGGCCAGACATTGATCAAGCATGATAGTCATGATGGAGGATTAACCATGGATATCTCCAAAGATGGTGAGGCAAGCACAACTAGTGGCAAGGATGGTGAGCACGAGCATTTTAGGGGTGCTAACATTAGTGGTGAGGCTCATGACAATGACTATGTTCAAATTAGCTCTTTTAAGGAAGCTATTGACTTGATTGGAGCATTTCAAACTCTTCCAAACTGCAGTCTCAAAAATTCCACAGTTGATTGCACGGGCAAATTTGACTTTTCTCCACAGTTGGATCTTTCCCTGAGAAGATCTCAACCTTGCAACTTTCAGAATGAACTCTCTGAAGAAAGACACACCCTCATGCATTCTAATGCCTCGGCTTTCAAGCGGTATACTAACAGGCCGCCATTGCAAGCCGCACCTGCAGTGTTGGTTAACTTCTCTGATCAACAAAGAGACCAAAGAACAAATTGTGGGAAAAGTATGCCCCATATCTCTACCGGCTGCAACTCAGATAGTTCCACATCTACTATGCAAAGATGTATTATGTCTCCAGCTACAACCCAATCAAAAGAATCTGATTTTGCAACTTCACATTCCCAACAAGGCCAGTCTCCCCCAATTCCAGTAAAAGGTGTAAGGTTTAATGATATATGTGCAGCCTATGGTTCTGTACTTCCTCCGATGTTTTGTACTCAATCAGGTCCACCATCAATGTCAAGTCCTAGTTCAGTTGTGATCCTTGAACCTTCCTTTCAATTAAATGCATTTTATCCGTCAAACATTATAGAAAACAGTTCTGAGAAGCTTTATGAACCTCATGGCCCTGATGGAAACAGCACCCAAAACCACATGGTGTACACACAGAGACACGAATCAGAATATTTGGAGGATCGAGAACGTATCTCTCCTGCAAATAATCTAAGTGTATTGAGTAGTTTCTGTAATGAAAATGCAAGCCATGTAAATCACACCGGCTATGGAAGCAATTATGGAATTAGCAGCAATTTTGATCAAATTGCCACTGTGAGGTCAGCTTCAGAGGATAATAATGAAGACCTCACAAACAATGGAAGTTCTCATCGATCTACCCTGAGAGAAGCAGCTCTAAACAAGTTTCGCTTGAAGCGGAAGGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCGAGGGTGAAAGGACAATTTGTTCGCCAAGCGCATCTTGATCCTCTTTCTGTAGAAAAAGTTGGTAATGAATATCAATAG 2097 0.4154 MLKMGDVVMNGEKLKLVGVEKEEERIKELKGLMKWEKFLPKMVLRVLLVEADDSTRQIISALLRKCSYKVAAVSDGLKAWEILKGRPHNIDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSVSTVYKCMLRGAADYLVKPLRKNELKNLWQHVWRRQSSTIGVSGSQEESASQQKVEVTAENNATSNRSIGGGASIKRNKELIEKGSDAHNTKCILFSRAYLSSSSSCTKPDLEVESDPVETLRESSPLTCGEACPSGTNIQEVETCIRLGQTLIKHDSHDGGLTMDISKDGEASTTSGKDGEHEHFRGANISGEAHDNDYVQISSFKEAIDLIGAFQTLPNCSLKNSTVDCTGKFDFSPQLDLSLRRSQPCNFQNELSEERHTLMHSNASAFKRYTNRPPLQAAPAVLVNFSDQQRDQRTNCGKSMPHISTGCNSDSSTSTMQRCIMSPATTQSKESDFATSHSQQGQSPPIPVKGVRFNDICAAYGSVLPPMFCTQSGPPSMSSPSSVVILEPSFQLNAFYPSNIIENSSEKLYEPHGPDGNSTQNHMVYTQRHESEYLEDRERISPANNLSVLSSFCNENASHVNHTGYGSNYGISSNFDQIATVRSASEDNNEDLTNNGSSHRSTLREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQAHLDPLSVEKVGNEYQ 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0620 698 Pfam CCT motif 640 682 IPR010402 GO:0005515
Lal17g0620 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 672 IPR045279 GO:0009736
Lal17g0620 698 SUPERFAMILY CheY-like 44 167 IPR011006 -
Lal17g0620 698 ProSiteProfiles Response regulatory domain profile. 45 163 IPR001789 GO:0000160
Lal17g0620 698 MobiDBLite consensus disorder prediction 428 483 - -
Lal17g0620 698 MobiDBLite consensus disorder prediction 172 191 - -
Lal17g0620 698 SMART REC_2 44 159 IPR001789 GO:0000160
Lal17g0620 698 Gene3D - 42 226 - -
Lal17g0620 698 MobiDBLite consensus disorder prediction 428 481 - -
Lal17g0620 698 ProSiteProfiles CCT domain profile. 640 682 IPR010402 GO:0005515
Lal17g0620 698 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 28 672 - -
Lal17g0620 698 CDD psREC_PRR 46 149 - -
Lal17g0620 698 Pfam Response regulator receiver domain 46 157 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0620 Lal-Chr17 4425484 4429527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0620 11 684 Response Regulator Gene Family AT5G24470 39.156 6.30e-119 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lal17g0620 Response_reg 4.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0620 K12130 - gmx:100777119 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0620 17 4425484 4429527 Lal17g0620 17 4425484 4429527 ECH
Lal17g0620 17 4425484 4429527 Lal4g0540 4 3927137 3931507 ECH
Lal17g0620 17 4425484 4429527 Lal21g0597 21 4497599 4501889 LSH
Lal17g0620 17 4425484 4429527 Lal4g0540 4 3927137 3931507 LSH