Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0618 ATGGTGGCATCAATAACTCTACTCACAAACACTTCATATCTTTCAAGTAATTGTTTTTCTCTGACATTTCATCCAAATCTTCTTATTCCTTCCTTTCATTCATTTTCAACCCTTTGTCCTCAATTTCAACCTCAACTTTTGTTCTCCCTCACAAAAACACTAAGACACAACCTCAAGTCACAACCATTTAACAGTGACTATTTCCGACCCACCAATCATGGTTTCTTTCTGTGCCGCCTTAGTGCATCATCTGCCACTCCTTCTACCCAACCAGGGATACTCTTCTCTGTTTTTGGAGAAATTGGTATTGGCTACGAAGAAGTAGAACTGCTCTTGGTCAATAACCATGATCTTACAGTGGTGTCAATAGATTCATTGCGCTCTCGGGTTCTTTCTTTGCAGTCTCTGGGGCTCGATCATGTTGACCTGTATCACTCGGTTATAAGGCAGCCAACTTTGTTAACAGCTAAGGAAATTGACCCCTTGCTATGTTTTTTGAGAGATGAATTGGAAGGACAACTTGAGCAATCACAGGTGAAGCACCTGTTATCTGCTTCGGAACCAAGATTTTTGGCCGGTTTTCCTCACAAGGTCCAATTGCTACATGACCGAGGAGTTCCCCGAGACAAGGTTGTTTATGTGCTCAACAGAGTTAATTTGCCAAAAGCGTTCATCCATAGGTCATTAGATGAAATTGACAGGATCTTTGATTTCCTGGAACCATTTGGCGGTGTTAGTTTGATTGTAAAGCGTCCCACGCTGCTCAACTATGATTTGGATAAACAGCTGATTCCAAGAGTTAGAGTCCTGGTAGAGCTTAGTGGAGGAGATAAGGATGGCACCGGGAAAGTGCTGCGCACACTGCCAGCAATTCTGAATTATAGTGTGGAACATGTGGAGGGACATATTAGGCTTCTTAGGTCTTTTGCAGGCCTTGATGACCAAGAAATATTTAAGATAATACTTGTATTCCCAGGTATTGTTACGGCTAGCAGAGACAGGAAACTTCGTCCGCGTATTCAGTTTCTTAAGGATTGTGGATTGGATTCAGGTGAGATCTTCAAGTTCTTGGTCAAAGCACCCTTGTTTCTAGGCCATTCATTTCACGAGAACATTGCATATAAACTTGTGTTTCTGGTCAAGATTGGGTTTAAGTATAGGACAAAGGAGTTGACAATGGCGATTGGGTCTACTACTAGGACAAGCTGTGAGAACATGCAAAAGGTGATCACTCTATTCTTGAGTTATGGCTTTTCATGTGAAGACATTGTTGCTATGAGCAAGAAGCAACCACAGATACTGCAGTATAATCATACTTCTTTGGAGAAGAAGATGAAATACTTGATAGAAGAGATGGATCGTGACATTGACGAGTTGCTGAGTTTTCCTGCTTTCCTTGGGTATAAGTTTGATGACAGAATTAAGCTTAGGTATGAAGTAAAGAAGGGTGTAAAAGGGGAACAAATGTCTCTCAATAAGCTTTTAACTATTTCAACTGAGAGATTCGCTGGCAAACAGAAAAGGGCAACTGCTATAGACAATCTGAATTGA 1551 0.412 MVASITLLTNTSYLSSNCFSLTFHPNLLIPSFHSFSTLCPQFQPQLLFSLTKTLRHNLKSQPFNSDYFRPTNHGFFLCRLSASSATPSTQPGILFSVFGEIGIGYEEVELLLVNNHDLTVVSIDSLRSRVLSLQSLGLDHVDLYHSVIRQPTLLTAKEIDPLLCFLRDELEGQLEQSQVKHLLSASEPRFLAGFPHKVQLLHDRGVPRDKVVYVLNRVNLPKAFIHRSLDEIDRIFDFLEPFGGVSLIVKRPTLLNYDLDKQLIPRVRVLVELSGGDKDGTGKVLRTLPAILNYSVEHVEGHIRLLRSFAGLDDQEIFKIILVFPGIVTASRDRKLRPRIQFLKDCGLDSGEIFKFLVKAPLFLGHSFHENIAYKLVFLVKIGFKYRTKELTMAIGSTTRTSCENMQKVITLFLSYGFSCEDIVAMSKKQPQILQYNHTSLEKKMKYLIEEMDRDIDELLSFPAFLGYKFDDRIKLRYEVKKGVKGEQMSLNKLLTISTERFAGKQKRATAIDNLN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0618 516 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF8, CHLOROPLASTIC 101 509 - -
Lal17g0618 516 SMART mt_12 424 455 IPR003690 GO:0003690|GO:0006355
Lal17g0618 516 SMART mt_12 245 276 IPR003690 GO:0003690|GO:0006355
Lal17g0618 516 SMART mt_12 354 385 IPR003690 GO:0003690|GO:0006355
Lal17g0618 516 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Lal17g0618 516 SMART mt_12 456 487 IPR003690 GO:0003690|GO:0006355
Lal17g0618 516 SMART mt_12 318 349 IPR003690 GO:0003690|GO:0006355
Lal17g0618 516 SMART mt_12 109 139 IPR003690 GO:0003690|GO:0006355
Lal17g0618 516 PANTHER CGI-12 PROTEIN-RELATED 101 509 IPR003690 GO:0003690|GO:0006355
Lal17g0618 516 Gene3D Transcription termination factor 3, mitochondrial 83 278 IPR038538 -
Lal17g0618 516 Gene3D Transcription termination factor 3, mitochondrial 279 511 IPR038538 -
Lal17g0618 516 Pfam mTERF 98 381 IPR003690 GO:0003690|GO:0006355
Lal17g0618 516 Pfam mTERF 335 503 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0618 Lal-Chr17 4416216 4419467 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lal17g0618 mTERF 1.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0618 - - gmx:100799904 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0618 17 4416216 4419467 Lal17g0618 17 4416216 4419467 ECH