Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0611 ATGGGTTCCAGTGAGTTGGCTTGCTCCTACGCCACCTTGATCCTCCACGACGAGGAAATCGCAATCACCGCGGAGAAGATTTCTACTGTGTTGAAGGCTGCTAACGTTAACGTTGAATCGTACTGGCCAAGTTTGTTTGCCAAGCTTGCTCAGAAGAGGAACATTGATGATCTCATCTTGAATTCCGGTGGAGGTGGTGCAGCTGCTGTTGCCGTCGCTGCCCCCGCTGCTGCCGCCGGTGGTGGTGCCGCCGCCGCAGCTCCAGCTGCTGAGGAGAAGAAGGAAGAGGCCAAGGAAGAAAGTGATGACGACATGGGCTTCAGCTTGTTCGATTAG 336 0.5476 MGSSELACSYATLILHDEEIAITAEKISTVLKAANVNVESYWPSLFAKLAQKRNIDDLILNSGGGGAAAVAVAAPAAAAGGGAAAAAPAAEEKKEEAKEESDDDMGFSLFD 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0611 111 Gene3D - 2 63 IPR038716 -
Lal17g0611 111 Pfam 60s Acidic ribosomal protein 22 110 - -
Lal17g0611 111 MobiDBLite consensus disorder prediction 84 111 - -
Lal17g0611 111 Hamap 50S ribosomal protein L12 [rpl12]. 6 111 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lal17g0611 111 PRINTS Ribosomal protein P2 signature 25 36 IPR001859 GO:0003735|GO:0005840|GO:0006412
Lal17g0611 111 PRINTS Ribosomal protein P2 signature 83 97 IPR001859 GO:0003735|GO:0005840|GO:0006412
Lal17g0611 111 PRINTS Ribosomal protein P2 signature 98 109 IPR001859 GO:0003735|GO:0005840|GO:0006412
Lal17g0611 111 CDD Ribosomal_P1 5 61 - -
Lal17g0611 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 111 - -
Lal17g0611 111 MobiDBLite consensus disorder prediction 89 105 - -
Lal17g0611 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0611 Lal-Chr17 4377794 4379733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0611 1 111 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 59.649 1.08e-41 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0611 K02942 - mnt:21402570 123.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0611 17 4377794 4379733 Lal4g0536 4 3897580 3899713 ECH
Lal3g1532 3 21028810 21030240 Lal17g0611 17 4377794 4379733 ECH
Lal17g0611 17 4377794 4379733 Lal17g0611 17 4377794 4379733 ECH