Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0610 ATGGAGGGGTCGACGCCATTTTCTGTCACTTACGAAGTTTTCTCTCCCCCATTAGATGAACGGGATATAGCATTCCAACAATCCCTTGCAGAAGTTCTTAATGGAGATTTTTTCTCCATCAAGATTCATATTACGTATCGAATTATCTGTTTAACTCGTGAACAACTACGACAATTACCAGAAGAAATAGATTACTATGAGTCTTCATATGACAGCGACATGCTTCTTTCATACCCAGAGGTCTTGGAAAGTGATTTGTTCATGGACATTCCTGACACTATCGTTCCACCTGAGTTGAACGAAATAGTGATGCCAGAAGTGATGAGACACGCTAGAAATTTATATGAAAGTTCTCGTAGTGATTCCAATGGTGAAACCAGTGGTTCTCGTTTGTTCAACTTAGTTTTGGATATTGATATTGATATTGATGGACTATATGATGAGGTTGTGAATATGGTGATGGAAGAGTCTGCAAGAGAAGTAAAAATGGTTCCAGCATCAAAGACTGAGATTGATTCACTCAAGAAAGTGAATCTTGGAAAAGATATTACCAAGGAAGAGTGTAGTATTTGTTTGGTGGAATTTAATGGGGACAAGGAGGTTTTAGCCATGCCATGCAAGCATATGTATCATAAAGAATGCATCACCCAGTGGCTTCAAAGGAGTGGTGTGTGTCCCTTGTGTCGCTATTCACTGTCCAAAAACAGCAGTTGA 714 0.3936 MEGSTPFSVTYEVFSPPLDERDIAFQQSLAEVLNGDFFSIKIHITYRIICLTREQLRQLPEEIDYYESSYDSDMLLSYPEVLESDLFMDIPDTIVPPELNEIVMPEVMRHARNLYESSRSDSNGETSGSRLFNLVLDIDIDIDGLYDEVVNMVMEESAREVKMVPASKTEIDSLKKVNLGKDITKEECSICLVEFNGDKEVLAMPCKHMYHKECITQWLQRSGVCPLCRYSLSKNSS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0610 237 Pfam Ring finger domain 187 229 IPR001841 -
Lal17g0610 237 PANTHER F6A14.12 PROTEIN-RELATED 95 232 - -
Lal17g0610 237 CDD RING-H2_PA-TM-RING 187 229 - -
Lal17g0610 237 SMART ring_2 188 228 IPR001841 -
Lal17g0610 237 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Lal17g0610 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
Lal17g0610 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 95 232 - -
Lal17g0610 237 SUPERFAMILY RING/U-box 187 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0610 Lal-Chr17 4375804 4376517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0610 158 232 C3H Transcription Factor Family AT1G26800 44.000 4.97e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0610 - - lang:109327711 342.043