Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0609 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCTTCAGATATCAGAGAATCAGAAATTGAAGATATCTTCTACAAGTATGGCCACATAGTGGATATTGAGTTGAAGGTTCCACCTCGCCCACCTTCTTTCTGCTTTGTCGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATCCGAGGTCGAGATGGATACAACTTTGATGGTTGTCGATTAAGGGTGGAGCTTGCCCATGGTGGTAGAGGGCAATCATCAAATGATCGTCGTGGCTATGGAAGTGGTGGCGGCAGTGGTGGCAGCGGCGGGGGTCGTTTTGGAATCTCACGCCATTCTGAATTTAGAGGGACTTTTGGCCTTGTTGATTACACTAATTATGACGACATGAAATATGCAATTCGGAAGCTGGATGACACTGAGTTCAAAAATCCTTGGGCAAGATCTTATATTCGGGTGAGGAAGTTCGAGAGCAGTCGCTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGAAGTCCTAAAAGGAATAGAAGTAGATCTTTGGAGCGATCTGTGTCAAGGTCACGATCTAGGTCTAGATCTAGGTCAGCATCACCAATCAAGCCTTCCAGGTGCTATCGGGTAGTGGTTGATTTTCTCACAAATGCAGGTGCTTCTTGGGTGCTGCTGTCCCCCATTCTGGACAGTCTTAGAGTTCTATTCCAAGTTGTTTAA 720 0.4694 MSGRFSRTIYVGNLPSDIRESEIEDIFYKYGHIVDIELKVPPRPPSFCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGQSSNDRRGYGSGGGSGGSGGGRFGISRHSEFRGTFGLVDYTNYDDMKYAIRKLDDTEFKNPWARSYIRVRKFESSRSRSRSRSPSRSRSPKRNRSRSLERSVSRSRSRSRSRSASPIKPSRCYRVVVDFLTNAGASWVLLSPILDSLRVLFQVV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0609 239 MobiDBLite consensus disorder prediction 177 191 - -
Lal17g0609 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lal17g0609 239 MobiDBLite consensus disorder prediction 158 201 - -
Lal17g0609 239 Gene3D - 2 110 IPR012677 -
Lal17g0609 239 SUPERFAMILY RNA-binding domain, RBD 6 147 IPR035979 GO:0003676
Lal17g0609 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lal17g0609 239 CDD RRM1_SF2_plant_like 8 79 - -
Lal17g0609 239 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 118 208 - -
Lal17g0609 239 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 117 - -
Lal17g0609 239 Gene3D - 111 157 IPR012677 -
Lal17g0609 239 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 117 - -
Lal17g0609 239 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 118 208 - -
Lal17g0609 239 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lal17g0609 239 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0609 Lal-Chr17 4367714 4373296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0609 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 31.579 8.11e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0609 K12890 - gmx:100786491 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0609 17 4367714 4373296 Lal17g0609 17 4367714 4373296 ECH
Lal17g0609 17 4367714 4373296 Lal21g0594 21 4467651 4476594 LSH