Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0608 ATGGCGGTTGCTGAGAATGTTGGAACAAAAATCGATTCTTCAAGTCAAAATTTGGACAATTGTGTTGTTTCACCTGAAACCGCTGAGGTGGAGAAATCAAAACCTATAAATGGTTCCATCAATGGTGATGATCAGAATCTGAATGGTGAGTTCAACCACCATGATCGAGCTCCCAAGACTGTACCAGTCCCTAACGGTAACTACAAAGTTGAAATGGGTCAGATGGGAAATGGGGTTCAGACCCAGCAGATGGTGGTGAACAATAATGGATACGGTGGGGTTAATGTGGAGAATGGGAATGAGAGTTTTCAGAAAGATATGAGGGATTTGGAGGAAATTTTGTCAAAGTTGAATCCCATGGCTGAGGAGTTTGTGCCCCCTTCAGTAACAAACAGTCTTGGTTACTTTGCTGGACCTGGTTCTGCTGGATTTGTGTACCCTAATAATTTCTTATTCGCCAATAATTATGGGAATGTTAACGGGCGAAACAACAGAAGGAGGAAGAATGGTTTTAATCAGGGGAAGCGAAGAGTCAATAATAAAATAGATATGGAGAGAAGAGAAGAAATGGTTAGGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGGCAGGTTGTTGATTGCCGTGTTTGTGGGGATCCTAATTCCATTCTTCGGTTTGCTTTTGTTGAGTTTATGGATGAGGAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGAACCATGCTTGGTTATTACCCATTGAGAGTGCTGCCTTCGAAAACAGCCATTGCACCTGTTAATCCAACATATTTGCCTCGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACTAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACAATTCTTTGAATCTATCTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCAGCACTACACTCGAATTGCATTTGTCGAGTTCACAGTGGCTGAAAGTGCAATTGCTGCTCTGAACTGCAGTGGTGTGATTTTGGGTTCAATGCCTATAAGGGTTAGTCCATCGAAGACACCAGTTCGGTCTCGTCTTCCTCGTGCTCCTATGCACTGA 1137 0.4354 MAVAENVGTKIDSSSQNLDNCVVSPETAEVEKSKPINGSINGDDQNLNGEFNHHDRAPKTVPVPNGNYKVEMGQMGNGVQTQQMVVNNNGYGGVNVENGNESFQKDMRDLEEILSKLNPMAEEFVPPSVTNSLGYFAGPGSAGFVYPNNFLFANNYGNVNGRNNRRRKNGFNQGKRRVNNKIDMERREEMVRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFMDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNIDKKLTQADVKQFFESICGEVQRLRLLGDYQHYTRIAFVEFTVAESAIAALNCSGVILGSMPIRVSPSKTPVRSRLPRAPMH 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0608 378 CDD RRM1_CID8_like 191 270 IPR034823 -
Lal17g0608 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 366 IPR000504 GO:0003723
Lal17g0608 378 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 378 - -
Lal17g0608 378 SMART rrm1_1 291 362 IPR000504 GO:0003723
Lal17g0608 378 SMART rrm1_1 194 264 IPR000504 GO:0003723
Lal17g0608 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 268 IPR000504 GO:0003723
Lal17g0608 378 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 378 - -
Lal17g0608 378 SUPERFAMILY RNA-binding domain, RBD 165 270 IPR035979 GO:0003676
Lal17g0608 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 359 IPR000504 GO:0003723
Lal17g0608 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 258 IPR000504 GO:0003723
Lal17g0608 378 Gene3D - 154 270 IPR012677 -
Lal17g0608 378 Gene3D - 275 371 IPR012677 -
Lal17g0608 378 CDD RRM2_CID8_like 286 367 IPR034825 -
Lal17g0608 378 Pfam Ataxin-2 C-terminal region 114 128 IPR009818 -
Lal17g0608 378 SUPERFAMILY RNA-binding domain, RBD 279 371 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0608 Lal-Chr17 4357089 4362198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0608 192 361 Eukaryotic Initiation Factors Gene Family AT1G34140 24.138 9.39e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0608 - - gmx:106794116 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0608 17 4357089 4362198 Lal4g0534 4 3878675 3883567 ECH
Lal17g0608 17 4357089 4362198 Lal17g0608 17 4357089 4362198 ECH
Lal17g0608 17 4357089 4362198 Lal21g0593 21 4459816 4464913 LSH
Lal17g0608 17 4357089 4362198 Lal4g0534 4 3878675 3883567 LSH