Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal17g0607 | ATGGCGGTTGCTGAGAATGTTGGAACCAAAATCGGTTCTTCAAGTCAAAATTTGGACAACAGTGTAGTATCATCTGACACCATCACTGAGGTGGAGAAATCAAAACCCAGAAACGGTTCCATCAACGGCGGTGATCAGAATATGAACGGTGTTTACAACCACCATTATATAGCTCCAAACGATAACTACAAGGTTCAAATGAGTCAGATTCGAAATGGGTTTGAAGAAAATGGGGTTCAGAATCAGCAGATGGTGGTGAATAATAATGGGTATGGTGGGGCTAATAATGGAGAAAATGGGAGTGAGAGTTTCAAGAGGGATATGAGGGGTTTGGAGGATCTTTTGTCAAAACTGAATCCCATGGCTGAAGAATTTGTGCCTCCATCACTGACCCAAAATCTTGGTTACTCAGCACAACCTGGTGCTGGGTTTGGTTACCTTAACAATTTTGTACTCCACAACAATTTTGGGAATGTTAATAGGCAAAATAACAGAAGGATATGGAGGAAGAAGGGCTATAACTATGGGAAGCGTAGAGCCAATGATAAAATGGATATGGAGAGGGAAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTCACTGAAGAGCAGCTGGCAGCCCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTATGTGGGGATCCTAATTCTGTTCTCCGGTTTGCCTTTGTTGAGTTTACAGATGAAGAAGGTGCAAGGACTGCTTTGAACCTGACTGGAACAATGCTAGGATATTACCCCTTGCGAGTGCTACCTTCAAAAACTGCCATTGCACCCGTTAATCCAACATTTTTACCCAGGTCTGAAGTTGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACTAATATTGATAAGAAGCTTACTGAAGCAGATGTCAAAAACTTCTTTGAATCTATTTGCGGAGAGGTTCAATGCTTGAAGCTTCTTGGAGATTACCAGCATTCCACTCGAATTGCCTTTGTCGAGTTTACTGTGGCTGATAGTGCAATTGCAGCTCTGAGCTGCAGTGGTGTGATTTTGGGTTCACTGCCTATAAGGGTTAGTCCATCAAAGACACCAGTCCGGTCTCATTCCCCCGGCACTTCTATGAGCTGA | 1143 | 0.4304 | MAVAENVGTKIGSSSQNLDNSVVSSDTITEVEKSKPRNGSINGGDQNMNGVYNHHYIAPNDNYKVQMSQIRNGFEENGVQNQQMVVNNNGYGGANNGENGSESFKRDMRGLEDLLSKLNPMAEEFVPPSLTQNLGYSAQPGAGFGYLNNFVLHNNFGNVNRQNNRRIWRKKGYNYGKRRANDKMDMEREEEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSVLRFAFVEFTDEEGARTALNLTGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEVEREMCSRTIYCTNIDKKLTEADVKNFFESICGEVQCLKLLGDYQHSTRIAFVEFTVADSAIAALSCSGVILGSLPIRVSPSKTPVRSHSPGTSMS | 380 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal17g0607 | 380 | PANTHER | POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE | 1 | 379 | - | - | |
Lal17g0607 | 380 | CDD | RRM1_CID8_like | 193 | 272 | IPR034823 | - | |
Lal17g0607 | 380 | SUPERFAMILY | RNA-binding domain, RBD | 183 | 271 | IPR035979 | GO:0003676 | |
Lal17g0607 | 380 | Pfam | Ataxin-2 C-terminal region | 116 | 129 | IPR009818 | - | |
Lal17g0607 | 380 | CDD | RRM2_CID8_like | 288 | 369 | IPR034825 | - | |
Lal17g0607 | 380 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 294 | 361 | IPR000504 | GO:0003723 | |
Lal17g0607 | 380 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 197 | 260 | IPR000504 | GO:0003723 | |
Lal17g0607 | 380 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Lal17g0607 | 380 | SUPERFAMILY | RNA-binding domain, RBD | 283 | 373 | IPR035979 | GO:0003676 | |
Lal17g0607 | 380 | Gene3D | - | 280 | 374 | IPR012677 | - | |
Lal17g0607 | 380 | Gene3D | - | 156 | 272 | IPR012677 | - | |
Lal17g0607 | 380 | MobiDBLite | consensus disorder prediction | 8 | 45 | - | - | |
Lal17g0607 | 380 | SMART | rrm1_1 | 293 | 364 | IPR000504 | GO:0003723 | |
Lal17g0607 | 380 | SMART | rrm1_1 | 196 | 266 | IPR000504 | GO:0003723 | |
Lal17g0607 | 380 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 195 | 270 | IPR000504 | GO:0003723 | |
Lal17g0607 | 380 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 1 | 379 | - | - | |
Lal17g0607 | 380 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 292 | 368 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal17g0607 | Lal-Chr17 | 4347078 | 4351551 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal17g0607 | 197 | 364 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 26.136 | 4.99e-06 | 46.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal17g0607 | - | - | aip:107622933 | 544.658 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal17g0607 | 17 | 4347078 | 4351551 | Lal21g0592 | 21 | 4437240 | 4441210 | LSH | |
Lal17g0607 | 17 | 4347078 | 4351551 | Lal4g0533 | 4 | 3871779 | 3875368 | LSH |