Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0607 ATGGCGGTTGCTGAGAATGTTGGAACCAAAATCGGTTCTTCAAGTCAAAATTTGGACAACAGTGTAGTATCATCTGACACCATCACTGAGGTGGAGAAATCAAAACCCAGAAACGGTTCCATCAACGGCGGTGATCAGAATATGAACGGTGTTTACAACCACCATTATATAGCTCCAAACGATAACTACAAGGTTCAAATGAGTCAGATTCGAAATGGGTTTGAAGAAAATGGGGTTCAGAATCAGCAGATGGTGGTGAATAATAATGGGTATGGTGGGGCTAATAATGGAGAAAATGGGAGTGAGAGTTTCAAGAGGGATATGAGGGGTTTGGAGGATCTTTTGTCAAAACTGAATCCCATGGCTGAAGAATTTGTGCCTCCATCACTGACCCAAAATCTTGGTTACTCAGCACAACCTGGTGCTGGGTTTGGTTACCTTAACAATTTTGTACTCCACAACAATTTTGGGAATGTTAATAGGCAAAATAACAGAAGGATATGGAGGAAGAAGGGCTATAACTATGGGAAGCGTAGAGCCAATGATAAAATGGATATGGAGAGGGAAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTCACTGAAGAGCAGCTGGCAGCCCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTATGTGGGGATCCTAATTCTGTTCTCCGGTTTGCCTTTGTTGAGTTTACAGATGAAGAAGGTGCAAGGACTGCTTTGAACCTGACTGGAACAATGCTAGGATATTACCCCTTGCGAGTGCTACCTTCAAAAACTGCCATTGCACCCGTTAATCCAACATTTTTACCCAGGTCTGAAGTTGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACTAATATTGATAAGAAGCTTACTGAAGCAGATGTCAAAAACTTCTTTGAATCTATTTGCGGAGAGGTTCAATGCTTGAAGCTTCTTGGAGATTACCAGCATTCCACTCGAATTGCCTTTGTCGAGTTTACTGTGGCTGATAGTGCAATTGCAGCTCTGAGCTGCAGTGGTGTGATTTTGGGTTCACTGCCTATAAGGGTTAGTCCATCAAAGACACCAGTCCGGTCTCATTCCCCCGGCACTTCTATGAGCTGA 1143 0.4304 MAVAENVGTKIGSSSQNLDNSVVSSDTITEVEKSKPRNGSINGGDQNMNGVYNHHYIAPNDNYKVQMSQIRNGFEENGVQNQQMVVNNNGYGGANNGENGSESFKRDMRGLEDLLSKLNPMAEEFVPPSLTQNLGYSAQPGAGFGYLNNFVLHNNFGNVNRQNNRRIWRKKGYNYGKRRANDKMDMEREEEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSVLRFAFVEFTDEEGARTALNLTGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEVEREMCSRTIYCTNIDKKLTEADVKNFFESICGEVQCLKLLGDYQHSTRIAFVEFTVADSAIAALSCSGVILGSLPIRVSPSKTPVRSHSPGTSMS 380
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0607 380 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 379 - -
Lal17g0607 380 CDD RRM1_CID8_like 193 272 IPR034823 -
Lal17g0607 380 SUPERFAMILY RNA-binding domain, RBD 183 271 IPR035979 GO:0003676
Lal17g0607 380 Pfam Ataxin-2 C-terminal region 116 129 IPR009818 -
Lal17g0607 380 CDD RRM2_CID8_like 288 369 IPR034825 -
Lal17g0607 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 361 IPR000504 GO:0003723
Lal17g0607 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 260 IPR000504 GO:0003723
Lal17g0607 380 MobiDBLite consensus disorder prediction 1 45 - -
Lal17g0607 380 SUPERFAMILY RNA-binding domain, RBD 283 373 IPR035979 GO:0003676
Lal17g0607 380 Gene3D - 280 374 IPR012677 -
Lal17g0607 380 Gene3D - 156 272 IPR012677 -
Lal17g0607 380 MobiDBLite consensus disorder prediction 8 45 - -
Lal17g0607 380 SMART rrm1_1 293 364 IPR000504 GO:0003723
Lal17g0607 380 SMART rrm1_1 196 266 IPR000504 GO:0003723
Lal17g0607 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 270 IPR000504 GO:0003723
Lal17g0607 380 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 379 - -
Lal17g0607 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 368 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal17g0607 Lal-Chr17 4347078 4351551 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0607 197 364 Eukaryotic Initiation Factors Gene Family AT1G34140 26.136 4.99e-06 46.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0607 - - aip:107622933 544.658
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0607 17 4347078 4351551 Lal21g0592 21 4437240 4441210 LSH
Lal17g0607 17 4347078 4351551 Lal4g0533 4 3871779 3875368 LSH