Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0606 ATGTCACAGCCATGGCAAAACAACATGATGAGTCCAAATGTTTCATCAACACAAGTTGTTGACACAACCTATACTAAGATCTTTGTTGGAGGGTTGGCTTGGGAGACTAAAAGAGACACTCTCAAATGTTATTTTGATCACTTTGGAGAGATCTTAGAGGCTGTTGTAATCACTGATAGAAACACAGGAAGATCAAAAGGATATGGCTTTGTAACATTCAAGGACCCAGATTCTGCAATAAGAGCTTGCCATAATCCTTATCCTGTGATTGATGGAAGGAGAACTAATTGTAATATTGCAGCTCTTGGTACACAAAAACTTGATCAATCTATAACAGCAAGGCAGAAAATAAGTAACCCTTCATGGACTATGGTACCAACCCCATTTCAAGGCACTTCTACTTATTATAACCAACACATACCTCAATATACATTTCCATATCCAGCATATAGGTATCCTGGTTGTCCTTCCCCACAAGGAATTTATGACATGAACCACTATAATGTATATAGTGGCCAGCAACTTCCATTTTGGTTATTACCAGCATATTATCAACCCTTTTATGGCCTTAGTAGACAGTTTATTCCAACAGCATATGTGAAAAAGACACAATTCCCTGAGATGTTACCTCAGGAGTTCTCTGTTGCTGACTTATCAGAACCTGTTTCAGTTTCTCCTTCAATTCAAACCACTGGATTAGTATCAGGAACATTATCTACTGCAGAAGGAGTGCTAGGATCACCCCAGAATAGAAACCTTTAG 762 0.3858 MSQPWQNNMMSPNVSSTQVVDTTYTKIFVGGLAWETKRDTLKCYFDHFGEILEAVVITDRNTGRSKGYGFVTFKDPDSAIRACHNPYPVIDGRRTNCNIAALGTQKLDQSITARQKISNPSWTMVPTPFQGTSTYYNQHIPQYTFPYPAYRYPGCPSPQGIYDMNHYNVYSGQQLPFWLLPAYYQPFYGLSRQFIPTAYVKKTQFPEMLPQEFSVADLSEPVSVSPSIQTTGLVSGTLSTAEGVLGSPQNRNL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0606 253 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 243 - -
Lal17g0606 253 PANTHER BOULE-RELATED 1 243 IPR037366 GO:0003729
Lal17g0606 253 SMART rrm1_1 26 98 IPR000504 GO:0003723
Lal17g0606 253 CDD RRM_RBM24_RBM38_like 25 100 - -
Lal17g0606 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Lal17g0606 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 83 IPR000504 GO:0003723
Lal17g0606 253 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Lal17g0606 253 Gene3D - 1 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0606 Lal-Chr17 4343726 4345869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0606 21 101 C2H2 Transcription Factor Family AT2G19380 41.975 6.75e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0606 - - gmx:100788634 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0606 17 4343726 4345869 Lal17g0606 17 4343726 4345869 ECH
Lal17g0606 17 4343726 4345869 Lal4g0532 4 3865295 3867510 LSH