Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0603 ATGGGTGAATTTGGCGTTTCACACAAGGAAGCTAATAAAAGTAGTGTTAGTACTTCTACTACTACTAGTAGTGTTGTTGGGTTGGGTTTGAAGAAGTTGCAGCATACTCTTGAAGCATTCCCTAGTAATAAGAATAATATGATGATGCTGCATCATAATCATCACCACCATCCACTGTCACAACCCTTTGATAATGATCTTTCTGTAGCTGCTCCTGGTGATGGTGATGGCCCTGTTCACACTACTTATATGTCTAATTTATCTAATCATATAAACCTTGTTGCAACAACTGGTTCTTATTCTGCACTTGGTGCTGGTGCTATTCATGATGATGCTTCTGTACCTGTAAGAACTTTGCAGCAACAGCCTTTTGATATTTCTGGTTATTATACTTCTGGTACCACTACTTACCCAGCCTTTAAATCCTCAGAGGTGATGGCAGCTTCATTGGGGTTTCCTTTCACAAGTGCACAATGGAAAGAACTTGAAAGACAAGCTATGATTTACAAGTACATGATGGCTTCTATTCCTATTCCCCCGGATCTCCTTATACCAACTGTTTCTCGCTCTACTTTTTGTGTCTTTGCTGTTGTTGCCTCAGTGAATAGTGGTTTCAATTTGAGGTTATCAGGCAATGATCCTGAGCCAGGTAGGTGCAGAAGAACAGATGGTAAGAAATGGAGATGTTCAAGAGATGTGGCACCTAACCACAAATATTGTGAGAGGCATATGCATAGAGGCCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTCACATCAATAACAACAACAACAACAACAACCAGAACCAGATCAAAAGGGCTCGCCATGATTCTAATCCTTTTTCTGCTTCTGATGTTAGTGTGTCTATTTCTAATAACACCACAACTAAAAAAGATGGATGTGCTTCTCAGTTTGTTTCTTCTGGTGCCACTAAGCCATACCTTGATACTTCTTCACTTCCTCTTCATCATAACTTTGGTGTCAAAACTGGGAACTTTGACTCTGTGGCTTCTGTTTCTTCAAATAAGGAACCCAGGGGCCTGGAATGGATGCTGAATGGAGATCCTATTTCCCTTGGTGCTTCTGATTCAGAATTTCACTCTCTGATGCACAATAAAGTTGGAAACACTGAGCCTCAGTATCTGAATTCATTTGCACTTTATAATTCTGGAGTACTAGATCAACAGAACAGACGCTCTTCTATGTTCCGTAATGCTCTCGACTTTCCAATGGAAAGTCTCCAATCCCCGAAACCAAGAGGTTACATTGATGCATGGTCAACAGAAGAAAGCAATGGTAACACCAACAAGAGCAATGTTGCATCAATTGGTAAATTTTCTCTTGATCTATCAATGGGTGGCGGTCGTGTGCACGAAGACATAGGTACTATTGACATGGGTTTAGGCCTAATGGAGAATGGAAACAACACAAAACAAAATGATACTAAAACCCATCTCTCAAATTGGTTAACCCCATCTTCATCATCATCACATTGGGTAGCTTCAACAACACTAGGGGGTCCATTAGCTGAAGTTTTAAGGCCAAGCACTATCACTAATGATGCAGCCTCTAATCAATCATCTTCTGTCATAACACATGCTGAATCAAGCAGCAACACTTTGGGAACATTGGTTTCACCCCCTTCTGGTGTTTTGCATAAAACAATTGCCTCATTTTCTGATAGTAGTAGCAATAGCAGCCCAAGGGTTGGATCATCAAGGGCCAGTAATTCTGATATTGCCTTGCTCAGGTTTAATTAA 1761 0.4089 MGEFGVSHKEANKSSVSTSTTTSSVVGLGLKKLQHTLEAFPSNKNNMMMLHHNHHHHPLSQPFDNDLSVAAPGDGDGPVHTTYMSNLSNHINLVATTGSYSALGAGAIHDDASVPVRTLQQQPFDISGYYTSGTTTYPAFKSSEVMAASLGFPFTSAQWKELERQAMIYKYMMASIPIPPDLLIPTVSRSTFCVFAVVASVNSGFNLRLSGNDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVHINNNNNNNNQNQIKRARHDSNPFSASDVSVSISNNTTTKKDGCASQFVSSGATKPYLDTSSLPLHHNFGVKTGNFDSVASVSSNKEPRGLEWMLNGDPISLGASDSEFHSLMHNKVGNTEPQYLNSFALYNSGVLDQQNRRSSMFRNALDFPMESLQSPKPRGYIDAWSTEESNGNTNKSNVASIGKFSLDLSMGGGRVHEDIGTIDMGLGLMENGNNTKQNDTKTHLSNWLTPSSSSSHWVASTTLGGPLAEVLRPSTITNDAASNQSSSVITHAESSSNTLGTLVSPPSGVLHKTIASFSDSSSNSSPRVGSSRASNSDIALLRFN 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0603 586 MobiDBLite consensus disorder prediction 10 25 - -
Lal17g0603 586 ProSiteProfiles QLQ domain profile. 153 188 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lal17g0603 586 SMART QLQ_2 152 188 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lal17g0603 586 MobiDBLite consensus disorder prediction 1 25 - -
Lal17g0603 586 ProSiteProfiles WRC domain profile. 213 257 IPR014977 -
Lal17g0603 586 MobiDBLite consensus disorder prediction 523 546 - -
Lal17g0603 586 PANTHER GROWTH-REGULATING FACTOR 7 122 576 - -
Lal17g0603 586 Pfam QLQ 153 185 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lal17g0603 586 Pfam WRC 214 256 IPR014977 -
Lal17g0603 586 PANTHER - 122 576 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0603 Lal-Chr17 4328680 4331672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0603 422 565 GRF Transcription Factor Family AT5G53660 31.875 1.30e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lal17g0603 WRC 6.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0603 - - lang:109328362 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0603 17 4328680 4331672 Lal4g0530 4 3848790 3852396 ECH
Lal17g0603 17 4328680 4331672 Lal17g0603 17 4328680 4331672 ECH
Lal17g0603 17 4328680 4331672 Lal21g0591 21 4425955 4428564 LSH
Lal17g0603 17 4328680 4331672 Lal4g0530 4 3848790 3852396 LSH