Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0601 ATGGGCCATTGTTGCAGCAAAGGCGTCGCCGCCGAAAATGGAACCTCCGTCACCGGTAGCTGTTTCAAGTCGTCTTATCAGCAATCACCACCGCCGGCGATGCCTTCCGTCAACTCATTCACTGACAGTGAGACGAAAAATCCGAGGAGGAACACTCCGGTGAGCTCATTCTCATGCAATAGTCCCTTCCCGAGCCCTCTACCGGCCGGGGTGGAGCCGTCTCCGGCGAGGACTCCCGGTCGGAAATTCCGGTGGCCGCTGCCGCCAACGTCGCCTGCGAAGCCGATCATGGAGGCGTTAATGAGGCGGCAGGGGAAGAGGGCTAAACCGAAGGATTGGCCGATACCGGAGGAGCAGCAAGGTGGTGATGGTGGTGAGGGAGAGAGGACTTTGGATAAGAGCTTCGGTTATGGGAAGAATTTTGCGGCGAAATTCGAGTTAGGGAATGAAGTAGGAAGAGGGCATTTTGGTCATACTTGTTATGCTAAAGGGAAGAAGGGTGAGCTTAAGGAACAATCAGTGGCTGTGAAAATCATATCCAAAGCTAAGATGACTTCAGAAATAGCAATTGAAGATGTACGAAGGGAGGTGAAAATGCTGAAGACCTTATCTGGACATAAAAAAATTGTCAAATTTTATGATGCATTTGAGGATGTAAATAATGTCTACATAGTGATGGAGTTGTGTGAGGGCGGAGAACTACTCGACAGAATTCTAGATAGAGGTGGAAGATACCCAGAGGATGACGCTAAAGCTATTATTTTACAAATTTTAGATGTTGTGGCCTATTGCCATATTCAAGGAGTTGTTCATCGTGATCTAAAACCAGAGAATTTTCTTTTTGTCTCAAAAGAGGAGAATGCTGAGATGAAAGTTATTGATTTTGGTCTATCCGATTTTATTAGACCAGATCAACGCCTTAATGATATTGTTGGCAGTGCCTACTATGTTGCACCTGAAGTACTCCATAGATCTTACAGTGTTGAAGCAGACTTATGGAGTATCGGAGTTATATCATACATATTGTTATGTGGAAGTAGACCATTTTGGGCTCACACTGAATCAGGAATCTTCAGGTCTGTGTTGAGAGCAAATCCCAACTTTGATGATTCACCTTGGCCATATATATCACCAGAAGCTAAAGACTTCGTGAAGAGACTTTTGAACAAGGACCACAGGAAAAGGATGACTGCTGCCCAAGCTCTAACTCACCCATGGTTGAGAAATGAAAAATTTGCTATTCCTTTAGATATTTTGATTTACAAGTTAGTCAAGTCATATGTGCGGGCCTCACCTTTGAAACGTGTGGCATTGAAGTCTCTCTCGACCGCATTGCCAGAAGATGAAATTATCTACCTTAGAGCACAGTTCAGCCTCTTGGAACCAAAAGATGGTTTCATTTCGCTTGAGAATTTTAGTGTGGCTCTCAAGAAAGTTGCAACCGATGCCATGAAGGAATCAAGGGTATCTGACATATTAAGTTTGATGGAGCCACTCTCTTATAAAAAAATGGACTTGGAAGAGTTCTGTGCCGCCGCAATCAGTGTATACCAACTGGAGGCTCATCAAGAATGGGAGAAAATTGCTGCCACAGCTTTTAAGCACTTTCAAGAGACAGGAAACAGGGTCATTTCAGTTGAGGAGTTGGCACAGGAGATGAGTTTGGGTCCTTCAGCTTACTCATTAATGGGTGATTGGATCACATCTGATGGAAAACTCAGTTTGGTGGGATACACAAAATTTTTGCATGGTGTCACAGTTCGTAGTTCAAATAATACAAGACACCGACAGCTAGTATAA 1800 0.4433 MGHCCSKGVAAENGTSVTGSCFKSSYQQSPPPAMPSVNSFTDSETKNPRRNTPVSSFSCNSPFPSPLPAGVEPSPARTPGRKFRWPLPPTSPAKPIMEALMRRQGKRAKPKDWPIPEEQQGGDGGEGERTLDKSFGYGKNFAAKFELGNEVGRGHFGHTCYAKGKKGELKEQSVAVKIISKAKMTSEIAIEDVRREVKMLKTLSGHKKIVKFYDAFEDVNNVYIVMELCEGGELLDRILDRGGRYPEDDAKAIILQILDVVAYCHIQGVVHRDLKPENFLFVSKEENAEMKVIDFGLSDFIRPDQRLNDIVGSAYYVAPEVLHRSYSVEADLWSIGVISYILLCGSRPFWAHTESGIFRSVLRANPNFDDSPWPYISPEAKDFVKRLLNKDHRKRMTAAQALTHPWLRNEKFAIPLDILIYKLVKSYVRASPLKRVALKSLSTALPEDEIIYLRAQFSLLEPKDGFISLENFSVALKKVATDAMKESRVSDILSLMEPLSYKKMDLEEFCAAAISVYQLEAHQEWEKIAATAFKHFQETGNRVISVEELAQEMSLGPSAYSLMGDWITSDGKLSLVGYTKFLHGVTVRSSNNTRHRQLV 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0601 599 SMART serkin_6 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0601 599 Gene3D - 424 514 - -
Lal17g0601 599 Gene3D - 431 554 - -
Lal17g0601 599 SUPERFAMILY EF-hand 433 583 IPR011992 -
Lal17g0601 599 PANTHER CDPK-RELATED KINASE 3 45 589 - -
Lal17g0601 599 MobiDBLite consensus disorder prediction 100 129 - -
Lal17g0601 599 SUPERFAMILY Protein kinase-like (PK-like) 144 435 IPR011009 -
Lal17g0601 599 MobiDBLite consensus disorder prediction 11 63 - -
Lal17g0601 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Lal17g0601 599 ProSitePatterns Protein kinases ATP-binding region signature. 151 177 IPR017441 GO:0005524
Lal17g0601 599 ProSiteProfiles Protein kinase domain profile. 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0601 599 PANTHER SERINE/THREONINE-PROTEIN KINASE 45 589 - -
Lal17g0601 599 MobiDBLite consensus disorder prediction 1 129 - -
Lal17g0601 599 CDD STKc_CAMK 144 406 - -
Lal17g0601 599 Gene3D Phosphorylase Kinase; domain 1 138 234 - -
Lal17g0601 599 Pfam Protein kinase domain 146 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0601 599 Gene3D Transferase(Phosphotransferase) domain 1 235 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0601 Lal-Chr17 4298309 4305286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0601 62 589 EF-hand Containing Proteins AT3G50530 58.507 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal17g0601 Pkinase 3.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0601 - - lang:109328769 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0601 17 4298309 4305286 Lal4g0526 4 3811992 3819109 ECH
Lal17g0601 17 4298309 4305286 Lal17g0601 17 4298309 4305286 ECH