Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0600 ATGGGTATTGGTGAAGATAATAATAGTAATAATAATAATCACAAGCTTCATCTACACAACCCTCACCTTCATTTTCATTTTCATCATCATCATGACAAGAAAGACATCCCAAAAGGTTGTTTGGCCATCTTGGTGGGACAAGGAGAGGAGCAACAAAGGTTTGTGATCCCTGTGATATACTTCAACCACCCACTTTTCATGCAATTGTTGAAAGAAGCTGAAGAAGAATATGGGTTTAAGCACAAGGGTCCTATTATTATTCCTTGTCATGTGGAACAGTTTAGGACTGTTCAAGGTATGATTGATAGGGACAAATCTCACCACCACCATGATCACCATCATAACCAACATGTTTGGTGCTTTAAAGTTTGA 372 0.3817 MGIGEDNNSNNNNHKLHLHNPHLHFHFHHHHDKKDIPKGCLAILVGQGEEQQRFVIPVIYFNHPLFMQLLKEAEEEYGFKHKGPIIIPCHVEQFRTVQGMIDRDKSHHHHDHHHNQHVWCFKV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0600 123 Pfam Auxin responsive protein 30 99 IPR003676 GO:0009733
Lal17g0600 123 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 19 116 - -
Lal17g0600 123 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 19 116 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0600 Lal-Chr17 4296361 4296732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0600 35 95 Calmodulin-binding Proteins AT3G43120 54.098 2.16e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0600 K14488 - gmx:100526867 163.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0600 17 4296361 4296732 Lal4g0525 4 3807066 3807455 ECH
Lal17g0600 17 4296361 4296732 Lal17g0600 17 4296361 4296732 ECH