Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0592 TTATCCAACCCTCGCGGGCTTGGATCATATAAGCCCGGCCCATTGGGTCGGAAAGAAACAAGCCCAAACAAAGCCCGCCCTTTCGTCAACCTCAAGCTCAAACCATTCGTATTCTTTTCTCCTTCTCTTATTTCCTCAACTCTCATTCCTCCTTCCCAAGAATTTCAGATAGCGATAAGACTAACAGAAAAGAGAAAAAAAATAAGCTTGTTTGTGAATTCAACTTACCCATATCGTTTTCATATAAAATTTCAATTGCTTGAAAGAAAAGGAATAATGGGTGGTTCATCAGACACGAGGTTACTACACGAGCTGCTATTGTACGCAGCAAGCGCTGCTTTAAGTTGTTTGGTTTTGTTCACGGGGCTCCGACACCTTGACCCGAACCGTGAGTCATCGAAGAAGGCTTTAGAGCATAAGAAAGAGATTGCTAAGCGTCTTGGTCGGCCACTTATTCAAACAAACCCTTATGAGGATGTCATAGCCTGTGATGTTATAAATCCTGACGATATTGATGTAGAGTTTAATTCTATTGGGGGACTGGAAAAAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCGCTGAAAAGACCTGACTTGTTTTCTCATGGTAAGCTTCTTGGACCACAAAGGGGGGTTCTGTTGTATGGACCACCTGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCTAAGGAGTCAGAAGCAGTTTTTATTAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGTGATGCTCAAAAGCTTGTGGCTGCCGTATTTAGCCTGGCTCATAAGCTCCAGCCTGCAATCATATTCATTGATGAAGTTGACAGCTTTTTGGGTCAACGTCGTACAACAGATCACGAGGCTTTGTTAAACATGAAAACTGAATTCATGGCTCTGTGGGATGGATTTACCACAGATCAGAATGCTCGAGTTATGGTCCTTGCAGCGACTAATCGCCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAGATTGGAGTTCCAGACCAGAGAGAGAGGGCTGAGATACTGAAGGTTATCTTAAAGGGTGAGAGGGTTGAAGACAACATTGATTTTGTTCATGTAGCTGGTTTATGTGAGGGTTATACTGGTTCAGATCTTTTTGATCTCTGCAAGAAGGCTGCGTATTTTTCTATCAGAGAACTGCTGGATGAAGAGAAGAAAGGGAAACGATCTTCTGCTCCTAGGTCTTTGTCTCAGTTAGATTTGGAGAAGGCTCTTGCCACTTCACGGAAGACAAAGGTTGCGGCAAGTGAATATGGAGGAATAAGCCTACAATCACCATCAAGATTTACAGTGCACAGTGAGACAGGTGATTACCCGCTTCAAGCTGCAATCAATGAATTCTCTAAGCTTGTGGTTTCTAACATGATTAACCTCCACCAATCAGATGCTCAAGATCCTTAA 1458 0.43 LSNPRGLGSYKPGPLGRKETSPNKARPFVNLKLKPFVFFSPSLISSTLIPPSQEFQIAIRLTEKRKKISLFVNSTYPYRFHIKFQLLERKGIMGGSSDTRLLHELLLYAASAALSCLVLFTGLRHLDPNRESSKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDDIDVEFNSIGGLEKIKQALFELVILPLKRPDLFSHGKLLGPQRGVLLYGPPGTGKTMLAKAIAKESEAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGVPDQRERAEILKVILKGERVEDNIDFVHVAGLCEGYTGSDLFDLCKKAAYFSIRELLDEEKKGKRSSAPRSLSQLDLEKALATSRKTKVAASEYGGISLQSPSRFTVHSETGDYPLQAAINEFSKLVVSNMINLHQSDAQDP 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0592 485 Gene3D - 172 430 IPR027417 -
Lal17g0592 485 Gene3D - 345 425 - -
Lal17g0592 485 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 95 439 - -
Lal17g0592 485 Pfam AAA+ lid domain 366 402 IPR041569 -
Lal17g0592 485 CDD AAA 179 343 - -
Lal17g0592 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 402 IPR027417 -
Lal17g0592 485 Pfam ATPase family associated with various cellular activities (AAA) 214 343 IPR003959 GO:0005524|GO:0016887
Lal17g0592 485 SMART AAA_5 210 346 IPR003593 -
Lal17g0592 485 ProSitePatterns AAA-protein family signature. 316 335 IPR003960 GO:0005524|GO:0016887
Lal17g0592 485 MobiDBLite consensus disorder prediction 1 23 - -
Lal17g0592 485 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 95 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0592 Lal-Chr17 4233397 4238514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0592 131 423 Calmodulin-binding Proteins AT3G56690 32.660 8.13e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0592 K22530 - gmx:100796908 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0592 17 4233397 4238514 Lal4g0517 4 3745802 3750670 ECH
Lal17g0592 17 4233397 4238514 Lal17g0592 17 4233397 4238514 ECH