Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0582 ATGAGTAGCTTCAGTGGAGACGAGGAATGTCGGTTTTTCGATGCTGTTGAGGATGTTGTATCAATTGCAGATACAAAATTGGACAATGACAGTGTTTCTACTCCTACAGAAGGAAAATCCAATGGTTTTGATTATGAATTTTGGGTTCAGAGCCCGAGGAGTGTGAAAGAACGTAGAAGTAGGTTTATGAAGAGGATGGGGTTGAGTGTGGAAGGGAATGGTGTTAGAGATTCAGTGCATTTGTGTGGTGGTGGTGTTGATGGGGAAGAGGTGAACTATAGAGTGAACGATTGTCAGGGTGCTGTGAATAGGAGTTGTGGTTTTGAGGAGGAGTTCTGTTCGAGCCGGTCATCAATGTCTTGTTGGTCTACAATGAATTCTTCAGAGGAGGTTGGTTTGGTGGAGAATTTGCCGTGTAATGTGGATCAGGAGGGGCAGGATAGGAAGACGAATGATGGTGGTAGATATGTGGATTCGGGGGATTCGGATCGGTTGGTGGTTGCTGAAGAGCCTGAGGATTCTGAGAACACCTTCCAACGTCTGTCAAGTAGGGGGTTTGAGGAAACGGATGCTGATGTGGATGCTTTATCGAAGAGGATGAACAGGTCTAGAAGGGGTTGGTTACGAAGATTGCGGTCTATAATGTGTATAATGGATTGGCAAGGTGAATCTGAAAATGGGGGACAAGGAGATAGTTGTAGATTCTCAGGGTGTAAGCTTCAGAAAGTTAAGGTTCGTCAATGTAAGAAGCAAATGAAGGAACTTTCAGCTCTTTACATGAAGCAAGACATTCAAGCCCACGAAGGTTCAATTTTGAGCATGAAATTCAGCCCTGATGGACAGTACCTTGCCAGTGCTGGCGAAGATGGGGTTGTGCGTGTGTGGCAAGTGGTTGTGGAGGATAGGTGTAAAGAAATCGACATTCCAGAAATTGATCCATCCTGCATTTACTTCACAGTGAATAATCTCTCTGAATTGACACCACTGTTTATGGAAAAGGAAAAAATTAGCAAAGTGGAGGGCCTGAAAAAAACATCAGATTCAGCTTGCATTATTTTTCCTCCTAAGATCTTCCGGTTGTTGGAGAAACCGTTGCATGAGTTCAACGGTCATAAAGGTGAAGTTTTGGATCTCTCTTGGTCAAAGAATAATTATCTCCTGTCATCTTCTGTTGACAAAACTGTCCGTCTATGGCACGTGAAACATGAAAATTGCCTGAAAATTTTCTCGCACAGCAATTATGTGACATGCATACAATTCAACCCGGTGGATGACAATCATTTCATTAGTGGATGTATAGATGGAAAAGTGCGCATCTGGGCAATTCCTGATTGTCATGTTGTTGATTGGATTGATATTAGAGACATAGTAACTGCAGTGTGTTATCGGCCTGATGGGCAGGGAGGAATTATTGGCTCCATGGCAGGCAATTGTCGATTTTTTAATGTAGCAGAGAATCACTTGAAGTTAGATTCCCAACTATGCTTGCTTGGTAAAAAGAAACTTCCTGGCAGAGGGATAACTAGCTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTTACTACTGCTGGTTCGCAAGTCAGAATCCTTCATGGGCTTAATGTGATTGGCAAATACAAAAGCCTTAGTGGTGTGAGTGCAATGTCGGCATCTTTTACTTCTGATGGGAAACATATATTATCAGCATGTGAGGACTCTAATGTATATCTATGGAATGTTAGTCAGGATGAGTCTAGTCCCACAAAAGCCAAGAAGATTACATCTTGTGAACGGTTTTTCTCAAATGCATCTGTTGCAGTGCCTTGGCATGGTTTGAAATCTCAAGATATTGATAGTGTACAGCAATTAGATATCTTGGATAAAAGATCACCTGCTTCTTTCTCTCTGGACCAAAAGTTTTTATTGGAGTCTTTGCCCAAGGGATCTGCGACTTGGCCTGAAGAGAACCTTCCTGTTTCAAGCCCCGAGGCTAAAACATGTTCGATGCATAAATCTGAATACAAGTTCTTGAAATCTTCTTGCAAGAGTACTTCCTGTTCACATGCGTGGGGTATGGTGATTGTGACTGCAGGGTGGGATGGACGTATAAAAACATTCCACAATCACGGGTTACCTATACCCGTTTAA 2133 0.4243 MSSFSGDEECRFFDAVEDVVSIADTKLDNDSVSTPTEGKSNGFDYEFWVQSPRSVKERRSRFMKRMGLSVEGNGVRDSVHLCGGGVDGEEVNYRVNDCQGAVNRSCGFEEEFCSSRSSMSCWSTMNSSEEVGLVENLPCNVDQEGQDRKTNDGGRYVDSGDSDRLVVAEEPEDSENTFQRLSSRGFEETDADVDALSKRMNRSRRGWLRRLRSIMCIMDWQGESENGGQGDSCRFSGCKLQKVKVRQCKKQMKELSALYMKQDIQAHEGSILSMKFSPDGQYLASAGEDGVVRVWQVVVEDRCKEIDIPEIDPSCIYFTVNNLSELTPLFMEKEKISKVEGLKKTSDSACIIFPPKIFRLLEKPLHEFNGHKGEVLDLSWSKNNYLLSSSVDKTVRLWHVKHENCLKIFSHSNYVTCIQFNPVDDNHFISGCIDGKVRIWAIPDCHVVDWIDIRDIVTAVCYRPDGQGGIIGSMAGNCRFFNVAENHLKLDSQLCLLGKKKLPGRGITSFQFLPQDSNKVMVTTAGSQVRILHGLNVIGKYKSLSGVSAMSASFTSDGKHILSACEDSNVYLWNVSQDESSPTKAKKITSCERFFSNASVAVPWHGLKSQDIDSVQQLDILDKRSPASFSLDQKFLLESLPKGSATWPEENLPVSSPEAKTCSMHKSEYKFLKSSCKSTSCSHAWGMVIVTAGWDGRIKTFHNHGLPIPV 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0582 710 SUPERFAMILY WD40 repeat-like 259 700 IPR036322 GO:0005515
Lal17g0582 710 PANTHER WD REPEAT DOMAIN 44 7 709 IPR040324 -
Lal17g0582 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 583 IPR001680 GO:0005515
Lal17g0582 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 401 - -
Lal17g0582 710 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 709 - -
Lal17g0582 710 SMART WD40_4 402 441 IPR001680 GO:0005515
Lal17g0582 710 SMART WD40_4 655 702 IPR001680 GO:0005515
Lal17g0582 710 SMART WD40_4 444 482 IPR001680 GO:0005515
Lal17g0582 710 SMART WD40_4 257 296 IPR001680 GO:0005515
Lal17g0582 710 SMART WD40_4 361 399 IPR001680 GO:0005515
Lal17g0582 710 SMART WD40_4 534 574 IPR001680 GO:0005515
Lal17g0582 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 440 IPR001680 GO:0005515
Lal17g0582 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 408 IPR001680 GO:0005515
Lal17g0582 710 Pfam WD domain, G-beta repeat 363 398 IPR001680 GO:0005515
Lal17g0582 710 Pfam WD domain, G-beta repeat 404 440 IPR001680 GO:0005515
Lal17g0582 710 Pfam WD domain, G-beta repeat 265 295 IPR001680 GO:0005515
Lal17g0582 710 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Lal17g0582 710 PRINTS G protein beta WD-40 repeat signature 386 400 IPR020472 -
Lal17g0582 710 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Lal17g0582 710 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 297 IPR001680 GO:0005515
Lal17g0582 710 Gene3D - 247 602 IPR015943 GO:0005515
Lal17g0582 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 440 - -
Lal17g0582 710 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0582 Lal-Chr17 4138366 4143175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0582 264 422 U-box Gene Family AT2G33340 23.529 7.13e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0582 - - gmx:100817209 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0582 17 4138366 4143175 Lal4g0507 4 3647965 3652840 ECH
Lal23g0525 23 8044037 8048371 Lal17g0582 17 4138366 4143175 ECH
Lal16g1130 16 7674844 7679244 Lal17g0582 17 4138366 4143175 ECH
Lal17g0582 17 4138366 4143175 Lal17g0582 17 4138366 4143175 ECH