Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0580 ATGGCAGATTGGTTACCTCTTCTTCAATCCATCTTCATTGCTCTCATCATTTCTTACCTCATCGCTAAGCTCTTCTCTTTCCTCATCTCTTTCAACCACCAAAACGTCACCGTTTCATCCACAACCACCACTACTCAATTCAAACCAATTCAACCCCATCCTGTGAAACAAAACGACTTCGTTTCTGAAATCACTCAACCTTTCGAATTGGAATCGGTTATTGCTGAGCAAGGAAGTGTTAGAAACGACGATGATGATGATGATGATGATTGGGAAGGTGTGGAAAGTACTGAGCTTGATGAAGCTTTCAGCGCCGCCACGGCTTTTGTGGCGGCCTCCGCCGCGGACCGGTTGTCTCAGAAGGTTTCGAATGAGGTGCAGCTTCAGCTTTATGGGTTGTATAAGATTGCCACTGAAGGTCCTTGTAGTACTCCTCAACCTTCGCCTCTCAAAATGACCGCACGTGCCAAATGGCAAGCATGGCAAAAATTGGGTGCTATGCCTCCTGAAGATGCGATGCAGAAGTACATTGATATTGTGACAGAGCTATATCCTTCTTGGCTTGATGGTTCATCTTTGAAGAGCAAAAGTGGCGATGGTGGTGGCTCTAGTTCAGAGGCTAAGGGACCAATGGGACCAGTATTCAGCACTTTTGTTTATGAGGAGGATTATGGAAGTGACTTGAAAATGGATGCCATTCATGGATTTGCTAGGGAAGGAGATAAGGCTAATCTGCTGAATTGTATTGAAAATGGTGTTTCAGTGAATTTGAAAGACAGTGAGGGCCGGACCCCATTACACTGGGCTGTAGATCGTGGCCACTTTGATGTCACAGAGCTGCTTGTTGTCAGGAATTGTGATGTAAATGCTAAGGATAATGATGGACAAACTCCATTACATTATGCTGTTATGTGTGAGAGAGAAGCAATAGCTGAGTATTTAGTGAAGCATAATGCAGACATTCATTCAAAGGATAATGATGGCAGTTCCCCGCGTGGCACCTGTGAGTCAAACTGGCCGTGTCTGCAGCAGCATGTGGGAGAAGTAAATTGA 1053 0.4501 MADWLPLLQSIFIALIISYLIAKLFSFLISFNHQNVTVSSTTTTTQFKPIQPHPVKQNDFVSEITQPFELESVIAEQGSVRNDDDDDDDDWEGVESTELDEAFSAATAFVAASAADRLSQKVSNEVQLQLYGLYKIATEGPCSTPQPSPLKMTARAKWQAWQKLGAMPPEDAMQKYIDIVTELYPSWLDGSSLKSKSGDGGGSSSEAKGPMGPVFSTFVYEEDYGSDLKMDAIHGFAREGDKANLLNCIENGVSVNLKDSEGRTPLHWAVDRGHFDVTELLVVRNCDVNAKDNDGQTPLHYAVMCEREAIAEYLVKHNADIHSKDNDGSSPRGTCESNWPCLQQHVGEVN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0580 350 Gene3D - 299 335 IPR036770 -
Lal17g0580 350 Pfam Acyl CoA binding protein 100 180 IPR000582 GO:0000062
Lal17g0580 350 ProSiteProfiles Ankyrin repeat profile. 294 326 IPR002110 GO:0005515
Lal17g0580 350 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 1 346 - -
Lal17g0580 350 Gene3D - 226 298 IPR036770 -
Lal17g0580 350 Pfam Ankyrin repeats (3 copies) 237 325 IPR002110 GO:0005515
Lal17g0580 350 PRINTS Acyl-coA-binding protein signature 122 140 IPR000582 GO:0000062
Lal17g0580 350 PRINTS Acyl-coA-binding protein signature 145 160 IPR000582 GO:0000062
Lal17g0580 350 PRINTS Acyl-coA-binding protein signature 166 183 IPR000582 GO:0000062
Lal17g0580 350 ProSiteProfiles Ankyrin repeat region circular profile. 261 293 - -
Lal17g0580 350 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 99 189 IPR000582 GO:0000062
Lal17g0580 350 PRINTS Ankyrin repeat signature 262 277 IPR002110 GO:0005515
Lal17g0580 350 PRINTS Ankyrin repeat signature 310 324 IPR002110 GO:0005515
Lal17g0580 350 ProSiteProfiles Ankyrin repeat profile. 261 293 IPR002110 GO:0005515
Lal17g0580 350 SUPERFAMILY Ankyrin repeat 229 332 IPR036770 -
Lal17g0580 350 ProSiteProfiles Ankyrin repeat region circular profile. 294 326 - -
Lal17g0580 350 SUPERFAMILY Acyl-CoA binding protein 98 188 IPR035984 GO:0000062
Lal17g0580 350 Gene3D - 93 204 IPR014352 -
Lal17g0580 350 SMART ANK_2a 294 323 IPR002110 GO:0005515
Lal17g0580 350 SMART ANK_2a 228 257 IPR002110 GO:0005515
Lal17g0580 350 SMART ANK_2a 261 290 IPR002110 GO:0005515
Lal17g0580 350 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 2 1 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0580 Lal-Chr17 4128231 4132822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0580 1 344 Acyl Lipid Metabolism Gene Families AT5G53470 62.319 8.74e-141 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0580 - - cam:101491997 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0580 17 4128231 4132822 Lal17g0580 17 4128231 4132822 ECH
Lal17g0580 17 4128231 4132822 Lal21g0164 21 1105081 1110527 LSH