Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0574 ATGGAGTTTCACTCTCACTCTCATCATGTTTTCCAGAATATTGAAGTTGCTCAAAGCCACAACTGGTTTTTCTCTCCTCTACAAACTGAATCAGACAAAATGATGGAATTTTCACCATGGAATGATTTCCTCGAGTTTGATTTCGCACCCCATTTCCCATACCAAACTAATCAACTTAGCTTCAATGGATCACTAGAATTCGAAAATATCAACTTTAATGACATCAACATTCCACCCCTTGATGAAAACTTTGGTGTTGAACATAAGCCATTGATGAACGTTATTGTGCCACAACCACCACCACCTTATGGTTTTGGTGAAGAAGGTTTTGTGACTTGTGTAAAGGAAGAAGTGATGGAGAACAGCGAATATATGAAATTATTCCCAAACAGCAACAAGAAAAAGGGTGCATGTGTTTGGGAGTTTGAGGAGATAAAGAAAGAAGTGGAAGAGAAAAATGAAGAAATGCTATGTTTGACTAATACTAATAGCAACAGCAGTATCAAGAAGCTGAGGTCAAGTGCTTTGGAGTTTGAGAATATTAAGAAGCATTTTGGTGTTCCTATAACTGAAGCTGCAAAGGAATTGAATATTGGGGTGACACTTTTGAAAAGAAGGTGTAGGGAGCTTAATATCATGAGGTGGCCACACAGGAAATTGAAGAGTTTGAAGTTGCTCATAGACAATGTCAAAGAATTGGGTTTGTCCAAAGAGGTTGGTTTATTGGAGCATCATATAAAAATGTTGGAGCAAGTACCTGGGATGGAACTCACTGAAGACACTAAGAAGCTGAGACAGGCTTGTTTTAAAGCTAGTTTCAAGAAGAGAAGGTGTTTAGCCATTTAA 846 0.3806 MEFHSHSHHVFQNIEVAQSHNWFFSPLQTESDKMMEFSPWNDFLEFDFAPHFPYQTNQLSFNGSLEFENINFNDINIPPLDENFGVEHKPLMNVIVPQPPPPYGFGEEGFVTCVKEEVMENSEYMKLFPNSNKKKGACVWEFEEIKKEVEEKNEEMLCLTNTNSNSSIKKLRSSALEFENIKKHFGVPITEAAKELNIGVTLLKRRCRELNIMRWPHRKLKSLKLLIDNVKELGLSKEVGLLEHHIKMLEQVPGMELTEDTKKLRQACFKASFKKRRCLAI 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0574 281 Pfam RWP-RK domain 176 223 IPR003035 -
Lal17g0574 281 PANTHER PROTEIN RKD4 27 278 IPR044607 GO:0003700
Lal17g0574 281 PANTHER PROTEIN RKD1-RELATED 27 278 - -
Lal17g0574 281 ProSiteProfiles RWP-RK domain profile. 163 244 IPR003035 -
Lal17g0574 281 Coils Coil 142 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0574 Lal-Chr17 4085199 4086722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0574 176 280 AtRKD Transcription Factor Family AT5G53040 59.048 6.49e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lal17g0574 RWP-RK 2.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0574 - - lang:109327731 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0574 17 4085199 4086722 Lal17g0574 17 4085199 4086722 ECH
Lal17g0574 17 4085199 4086722 Lal4g0502 4 3605422 3606752 LSH