Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0569 ATGCTATGTAATAACATACATTTGTTTCAGTACCAGATGGGGAAGAAAGGAAGTAGTTGGTTTTCATCTGTAAAGAAAGTTTTCAAGTCATCTTCTAAGGATTCTACTGTGCTGGACAAGAAGGACAAGGAAGAGAAATGGCAACATGAAGCACCAGAGGTTGTGACTTTTGAGCATTTTCCAGTAGGGAGTTCACCTGATGTCACCAATGAGGGGAGTATCACATCCACACCTGTGACTGAAGATAGAAATCATGCCATTGCCTTTGCAGAGGCAACGGCCGCTGCGGCCGAAGCCGCGGTGGTGGCTGCTCAGGCTGCTGCTAGAGTTGTGAGGATGGCGGGTTATGGACGGCACGCAAGAGAAGAAAGGGCAGCAACTGTTATTCAATCTTACTACAGAGGTTACCTTGCTCGACGTGCGCTTCGTGCTCTGAAAGGATTAGTGAGGCTGCAAGCGCTTGTGAGGGGACATAGTGTGAGGAAGCAAGCACAAATGACAATGAGATGCATGCAAGCATTAGTGCGAGTACAAGCAAGGGTAAAAGCTCGAAGACTCCAATTAACTAAGGAGAAGCTTCAGAGGACATTGGAGGAGCATGAACAAAGAGATCTCAAGATGGAAAAAGTGGCTCCTTATAAACCTATGAGCCCTATGACAAAGTTGCACATAGATGGGTGGGACAACAGGCATCAAAGTAGCCAGAAAATTCAGAGAAATGATTTGAGGAGACATGATGCTGCAATGAAAAGGGAGAGAGCTCTTGCATATGCTTTCAATTCTCAGCAACAACATCAATATTTGAAGATAGACCCAAATGTTGATGATATTGGAAGCTATGGAAATGAGCATGAAGCAACTCAAAGGGGTTGGGAGTGGTTAGAACGTTGGACATCATCACAACCAAATCATGTGAGGCACTTGGGCCCCACACATGAGATGACACTAACTACCACAGCCACAACTACCACAGATGACATGTCTGAAGAAAAAACAGTTGAAATGGATATGGTTGAACCTTCATACTCAACCCACTCCAACATGGGCCTGGTGGGCCAGGACTTTCTTGATTCAAGCCCAATGTCTGATAGGCACCACCAGAGACAGTACAGTGCTGAGGTACCTAGCTACATGGCCCCAACCCAGTCTGCTAAGGCCAAGGTTCGAAATCAAGGCCCGTATAGACAACGGGCTTCACCTGGGCCTAATTGGAACTCGTCGATGCGGAGAAATTCTCTTAATGGGTTGGGCTGTGACTCATCTGGCTCTGGTGTGGCCACTGCAGCTCGCAGCTTTTCAAAAAGCCCAAGCCCACAAATTAATGGGGTTCGAATCCAATCGAGGCGGATTTCGAGTGGTAGCCCGGATAATATTGGCATTGAGGATTGGGCCCATGGTTGGCCATGCCATGATTAA 1416 0.4696 MLCNNIHLFQYQMGKKGSSWFSSVKKVFKSSSKDSTVLDKKDKEEKWQHEAPEVVTFEHFPVGSSPDVTNEGSITSTPVTEDRNHAIAFAEATAAAAEAAVVAAQAAARVVRMAGYGRHAREERAATVIQSYYRGYLARRALRALKGLVRLQALVRGHSVRKQAQMTMRCMQALVRVQARVKARRLQLTKEKLQRTLEEHEQRDLKMEKVAPYKPMSPMTKLHIDGWDNRHQSSQKIQRNDLRRHDAAMKRERALAYAFNSQQQHQYLKIDPNVDDIGSYGNEHEATQRGWEWLERWTSSQPNHVRHLGPTHEMTLTTTATTTTDDMSEEKTVEMDMVEPSYSTHSNMGLVGQDFLDSSPMSDRHHQRQYSAEVPSYMAPTQSAKAKVRNQGPYRQRASPGPNWNSSMRRNSLNGLGCDSSGSGVATAARSFSKSPSPQINGVRIQSRRISSGSPDNIGIEDWAHGWPCHD 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0569 471 MobiDBLite consensus disorder prediction 396 454 - -
Lal17g0569 471 Pfam Protein of unknown function (DUF4005) 359 414 IPR025064 -
Lal17g0569 471 Coils Coil 176 210 - -
Lal17g0569 471 MobiDBLite consensus disorder prediction 386 471 - -
Lal17g0569 471 Gene3D - 122 164 - -
Lal17g0569 471 PANTHER IQ-DOMAIN 21 13 445 - -
Lal17g0569 471 PANTHER IQ-DOMAIN 5-RELATED 13 445 - -
Lal17g0569 471 SMART iq_5 144 165 IPR000048 GO:0005515
Lal17g0569 471 SMART iq_5 121 143 IPR000048 GO:0005515
Lal17g0569 471 ProSiteProfiles IQ motif profile. 122 150 IPR000048 GO:0005515
Lal17g0569 471 ProSiteProfiles IQ motif profile. 146 173 IPR000048 GO:0005515
Lal17g0569 471 Pfam IQ calmodulin-binding motif 123 143 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0569 Lal-Chr17 4055660 4060445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0569 13 465 IQD Protein Family AT3G49260 48.255 8.61e-101 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0569 - - aprc:113873497 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0569 17 4055660 4060445 Lal17g0569 17 4055660 4060445 ECH
Lal17g0569 17 4055660 4060445 Lal21g0570 21 4227380 4233728 LSH
Lal17g0569 17 4055660 4060445 Lal4g0496 4 3558553 3562392 LSH