Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0565 TTTTCCCACAGAAAAAGGAAGAAAAAAAAGGAGCAAAAGAGAACAGAGTGGGAAGAAAATTTTGAAAAGGGGGAATACCCAGAAGGGTTTGGTGATTTGATGGACTTGGACAGCATTGAATGTGTGTCATACTCTGATGGCATGGATGAGGATGAGATCCATCTCCACCATCATCACTCTGAGTTTTCTTCCACAAAGCCTCGTAATGGAGGTACCAATCACAATAATTCCATGCTTTCCACGGCCATTGCTCCTGCTACCAGTGTCCATGAATTGCTTGAGTGCCCTGTTTGTACCAATTCAATGTACCCTCCAATTCATCAGTGCCACAATGGCCACACACTGTGTTCCACTTGTAAAACAAGGGTGCACAACCGATGCCCCACCTGTAGACAAGAGCTTGGAGATATTAGGTGTTTGGCACTGGAGAAAGTAGCTGAATCACTTGAGTTACCTTGCAAGTTCTACTCCCTTGGATGTCCGGAAATCTTTCCATACTACAGCAAGCTTAAGCACGAGACAGTGTGCAATTTTAGGCCGTACGGTTGTCCTTATGCTGGATCAGACTGTTCTGTTGTTGGGGACATTCCCTTCCTTGTTGCGCATTTGAGGGATGATCATAAGGTGGATATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACCTGGATGCTCACGGTGTTTCATTGTTTTGGCCAATACTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCCCCTGTTTACATGGCATTCCTTCGTTTCATGGGCGATGAGAATGAGGCTCGGAACTATAGCTATAGCCTAGAGGTTGGGGGCAATGGCAAGAAACTCATGTGGGAGGGTATGCCACGAAGTGTTCGGGATAGTCACCGTAAAGTTAGGGATAGTCATGATGGTCTCATCATTCAACGAAATATGGCACTATTTTTCTCTGGTGGGGATAAGAAGGAGCTGAAACTTAGAGTTACAGGAAGAATATGGAAAGGACAACAGAGTTCAGATGCTAGGGTGTGCATACCAAATCTTTGTAGCTGA 1074 0.4516 FSHRKRKKKKEQKRTEWEENFEKGEYPEGFGDLMDLDSIECVSYSDGMDEDEIHLHHHHSEFSSTKPRNGGTNHNNSMLSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYSLGCPEIFPYYSKLKHETVCNFRPYGCPYAGSDCSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGGNGKKLMWEGMPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKGQQSSDARVCIPNLCS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0565 357 CDD Sina 209 337 - -
Lal17g0565 357 ProSiteProfiles Zinc finger SIAH-type profile. 148 208 IPR013010 GO:0008270
Lal17g0565 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 147 IPR013083 -
Lal17g0565 357 MobiDBLite consensus disorder prediction 1 20 - -
Lal17g0565 357 SUPERFAMILY TRAF domain-like 148 340 - -
Lal17g0565 357 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 34 348 - -
Lal17g0565 357 Pfam Seven in absentia protein family 137 336 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lal17g0565 357 CDD RING-HC_SIAHs 93 131 - -
Lal17g0565 357 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 202 336 IPR008974 GO:0005515
Lal17g0565 357 SUPERFAMILY RING/U-box 87 134 - -
Lal17g0565 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 34 348 - -
Lal17g0565 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 201 IPR013083 -
Lal17g0565 357 ProSiteProfiles Zinc finger RING-type profile. 95 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0565 Lal-Chr17 4027390 4033243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0565 63 341 C3H Transcription Factor Family AT2G41980 74.910 9.72e-160 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0565 K04506 - gmx:100810573 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0575 22 3938584 3941696 Lal17g0565 17 4027390 4033243 ECH
Lal17g0565 17 4027390 4033243 Lal17g0565 17 4027390 4033243 ECH