Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0561 ATGTATGCAGAGACAGGTCTTTTCTTCCCATACTTGCAGAACTTCTCTCAAGATCTTCATCAACTTGAAGAGTACTGCAAAACCCATAAAACTAATGTTTCTTTGAGTGGTCTTGTTCAGTCTTCTGCCATGTCAGAGTACGATTTTGCAGCAGAGGGAGATCTGTTCAAAGCACCTGAACCAATTATCGAAGAATCATTCATGGACCTGGATCCTATGACAGCAGCAATCTCAATGATGTCTTGTGGAGAAGGTGTTTCGTCACAGGGACTTCAATCCACAGACATTGATGATCTTCAAAAAGAACAGCTTCTAAGTGACATGTTGTATGAGTGTGAAAAGGATCTCTTAGAAAAGGCTGCGATAGAATCACCACTCTCTGAGATTTTGGATATCAAGGTTCCTGCTTTAAACATGGATGAGTATTCAATTCAAGAAGATAAACCATTTCCTGACATGCCAAAGAGTGTAAGTTCGGTAAGCTTGAGCTCAATGGACTGGATGCATGGTGCTGCAATGAAGCCGGCTTTCCTTGATTTCCCAGGAATAGATTTCAATTCAGATTATGGCATGCGAAGATCATTTAGTGAAGGAGATATAAAGGCTCTCGGTAATGGTAATTTGAACATCGTCCAGTCTCCCCGTGAAAGGCCCTTTCTTATCAGCAACTGCACCAGTGAGGAACGCCAAGAAAAGCTTTCCAGGTACAGGCATAAGAAGACAAAGAGGAATTTTGGGAGGAAAATCAAGTATGCCTGCAGGAAAGCTCTTGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCAAAGACTGAAGAATCCGATGTCAAAAGGCAATAA 840 0.419 MYAETGLFFPYLQNFSQDLHQLEEYCKTHKTNVSLSGLVQSSAMSEYDFAAEGDLFKAPEPIIEESFMDLDPMTAAISMMSCGEGVSSQGLQSTDIDDLQKEQLLSDMLYECEKDLLEKAAIESPLSEILDIKVPALNMDEYSIQEDKPFPDMPKSVSSVSLSSMDWMHGAAMKPAFLDFPGIDFNSDYGMRRSFSEGDIKALGNGNLNIVQSPRERPFLISNCTSEERQEKLSRYRHKKTKRNFGRKIKYACRKALADSQPRIRGRFAKTEESDVKRQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0561 279 ProSiteProfiles CCT domain profile. 229 271 IPR010402 GO:0005515
Lal17g0561 279 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 28 277 - -
Lal17g0561 279 Pfam CCT motif 229 271 IPR010402 GO:0005515
Lal17g0561 279 PANTHER CCT MOTIF FAMILY PROTEIN 28 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0561 Lal-Chr17 3993197 3998533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0561 212 274 C2C2-CO-like Transcription Factor Family AT3G21880 44.444 5.20e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal17g0561 CCT 2.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0561 - - lang:109334668 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0561 17 3993197 3998533 Lal21g0567 21 4189907 4194168 LSH
Lal17g0561 17 3993197 3998533 Lal4g0488 4 3488441 3492691 LSH