Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0560 ATGATCATAAAGCGCAACCTGAAATCCCAAATGCCGAGTGTGAAACGGTGCAAATCCAGTGACCCAGTTGGTGAAAAAGATGAGTGTTCTTATGCACGTAAAAAGAGGAAGAAGACGAGTAACGATTACTATCCTTTAAACCTTCTCGGCGACATCGTCACCGGCGAAATTCCGGTGAGCTTTCATGGCCTTCTGACAGAGAATGGATTCTCTGCTTCGTTGTTCACTGAAGTTTCGTGCTCCACGCCCTGTGAAGTGGAATCCAATTCGAAGGATGTTGATGGTGATGGTGGTAGTGACACTAAGAAGAATCGTGGCGGTGGCAGTGAGGCTCATCGTCCACCACTGGTTAGGACCTCAAGGGGAAGGGTTCAGGTGCTGCCGTCGCGGTTCAATGATTCTGTTATTGATAATTGGAGAAAAGATAGCAAGAGCAGCTTGCGTGATTGTGATGATTGTGATGATGAATTTGAACCCAAGAGAGGGAAATTGGGTTTCAAAGCACAGAAAAATAGCAATCAGAATGCTAAAAAAGTGCGAAAGGATGAGAAAATCGGTTACAAGCCTCAAAAGTATTCAGCATTGTGTGAGAAGGCAAGGAATGATGTTGATGTGAGGTTTAGGAGTTTTGATGAGAGAGAGAGGTTTGTGGAGATGGAAGGAGTTGAGTCAATGGGAAATGAGAGAGCTTTGAAGAAGATTCGGAAGAGGGAAGATGGGTTGTATGGACCAGAAGATTTTTATGCAGGTGATATAGTTTGGGCCAAAGCAAGGAGAAGGGAACCTTTTTGGCCGGCCATTGTGATTGATCCTATGTCTCAGGCACCTGAACTGGTTCTAAGGTCTTGTGTAGCTGATGCAGCTTGTGTAATGTTTCTCGGATTTGCAGGCAATAAAAATCAAAGGGACTATGGATGGGTGAAGGATGGGATGATTTTTCCATTTGTGGATTATGTAGACAGGTTTCAGGGGCAGTCTGAATTCAGTTACTATAATCCTTCTCAACTCCAAGTGGCTATAGAGGAGGCATTTTTAGCAGACCAGGGCCACACAGAGAAGTTGATAACAGATATAAATTCAGCGGCTGCTAACACTGATATTGATGATACTATTCTGAAAGTCCTTCGGGAGGACACTGGTCCAAACCAGTATGCAAGATATCACTTTCTGGACCAGGATTTATTTGATAAGAAGGATACACGATCATGTGAAGCCTGTGGGTTGGCCCTTCCTTTCAAAATGTCCAAGAAAATAAAGGATTCAACTCCTGATGGCCAATTCCTATGTAAAACATGTGCCAGGTCTTTGAAAACATTTTTTTCTGGCCAGCTAACAAAGTCAAATCATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGTAGCTGGGTGCGCTGTGATGGGTGTAAAGTCTGGGTGCACGCAGAATGTGATAAAATTTCCCGGAGCATTTTCAAGAACCTTGAAGGCACTGATTATTTCTGCCCTACTTGCAAAGCCAAGTTTGACTTTGAGTTATCTGATTCAGAAAAATTATGGTCAAAAGCCAAGTGTAACAATAACAGTGGGCAGCTAGTGCTTCCAAATAAGGTCACTGTTCTCTGCAATGGTATAGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTCTGCAAGTGTGACTTTTGTGGGACAGAAAAGCAAGCACTTAGCGAATGGGAAAAACACACAGGTTCCAAATTAAGGAATTGGAAGCAAAGTATTCGGGTGAAGGACTCCATGCTGCCACTGGAACAATGGATGCTGAAGTTGGCAGAATTTCATGCTAAGGCTGTAGTTTCTGTCAAACCTAAAAAACCTTCTCTAAAAGAAAGGAAGCAGAAGTTGCTTACCTTCTTGCGAGAGAAATATGAGCCTGTTCATGCTAAGTGGACTACAGAACGTTGTGCTGTATGTAGATGGGTTGAAGACTGGGATTACAACAAGATTATTATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGTTATGGAGCAAGAAATGTTAAAGACTTTACATCATGGGTTTGCAAGGCTTGTGAAACACCTCACATAAAGAGGGAGTGTTGTCTTTGTCCTGTCAAAGGTGGTGCACTAAAGCCGACTGATATTGATACATTATGGGTTCATGTCACATGTGCTTGGTTTCAACCACAAGTCTCTTTTCCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTCAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATCTGCAAACAAATCCATGGTTCATGTACACAATGTTGCAAGTGTTCCACATATTTTCATACTACTTGTGCATCAAGAGCTGGATATCGCATGGAGATGCATTGTTCAGAAAAAAATGGTAGGCCAACAACAAAATGGGTTTCTTATTGTGCTTACCACAGGGCTCCTAATCCTGACAATGTCTTGATAGTGCAAACCCCTAATGGAATCATTTCAACTAAAAGCCTTCTTAAAAATAAGAAAAAGGGTGGATCAAGGCTGATTGCATCAAATAAAATGAAGCAAGATGACACTCCTCCTTTGGATAACGCCGACGATGAGCCATTCTCTGCTGCTCGGTGCCGTATTTTCCGGAGAACAAATCATACAAAAAAGAAAGCAGCAGATGAGGCCATTTTTCATCAAGTGAGGGGTCCCTACCACCATCCTTTAGATGCAATACAGAGATTAAATAAATACAGGAATGTGGAAGAGGAACCCAGGTCATTTTCTTCTTTCAGAGAGCGCCTTTGTCACTTACAGAAAACCGAAAATGAACGCGTTTGCTTCGGTAGATCGGGCATACATGGATGGGGCCTCTTTGCACGCAGAGATATTCAAGAAGGAGAAATGGTTCTTGAGTATCGCGGTGAACAAGTGAGGGGCAGCATTGCAGATCTGAGGGAGGCTCGCTATAGATTAGAAGGAAAAGACTGCTATCTGTTTAAGATAAGTGAAGAAGTGGTAGTAGATGCCACAGATAAAGGAAATATAGCACGGCTAATCAATCATTCTTGTATGCCGAATTGCTATGCAAGGATCATGTGTGTAGGTGACGATGAAAGTCGGATTGTACTCATTGCTAAGACTAAAGTATCTGCTGGCGATGAATTGACGTATGACTACTTATTTGATCCTGATGAGCCAGCTGAATCAAAAGTACCTTGTCTATGTAAAGCTCCGAACTGCCGGAAATTCATGAATTAG 3237 0.4217 MIIKRNLKSQMPSVKRCKSSDPVGEKDECSYARKKRKKTSNDYYPLNLLGDIVTGEIPVSFHGLLTENGFSASLFTEVSCSTPCEVESNSKDVDGDGGSDTKKNRGGGSEAHRPPLVRTSRGRVQVLPSRFNDSVIDNWRKDSKSSLRDCDDCDDEFEPKRGKLGFKAQKNSNQNAKKVRKDEKIGYKPQKYSALCEKARNDVDVRFRSFDERERFVEMEGVESMGNERALKKIRKREDGLYGPEDFYAGDIVWAKARRREPFWPAIVIDPMSQAPELVLRSCVADAACVMFLGFAGNKNQRDYGWVKDGMIFPFVDYVDRFQGQSEFSYYNPSQLQVAIEEAFLADQGHTEKLITDINSAAANTDIDDTILKVLREDTGPNQYARYHFLDQDLFDKKDTRSCEACGLALPFKMSKKIKDSTPDGQFLCKTCARSLKTFFSGQLTKSNHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISRSIFKNLEGTDYFCPTCKAKFDFELSDSEKLWSKAKCNNNSGQLVLPNKVTVLCNGIEGIYFPSLHLVVCKCDFCGTEKQALSEWEKHTGSKLRNWKQSIRVKDSMLPLEQWMLKLAEFHAKAVVSVKPKKPSLKERKQKLLTFLREKYEPVHAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVKDFTSWVCKACETPHIKRECCLCPVKGGALKPTDIDTLWVHVTCAWFQPQVSFPSDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHTTCASRAGYRMEMHCSEKNGRPTTKWVSYCAYHRAPNPDNVLIVQTPNGIISTKSLLKNKKKGGSRLIASNKMKQDDTPPLDNADDEPFSAARCRIFRRTNHTKKKAADEAIFHQVRGPYHHPLDAIQRLNKYRNVEEEPRSFSSFRERLCHLQKTENERVCFGRSGIHGWGLFARRDIQEGEMVLEYRGEQVRGSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMCVGDDESRIVLIAKTKVSAGDELTYDYLFDPDEPAESKVPCLCKAPNCRKFMN 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0560 1078 Pfam PHD-finger 450 503 IPR019787 -
Lal17g0560 1078 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1078 - -
Lal17g0560 1078 SUPERFAMILY FYVE/PHD zinc finger 443 505 IPR011011 -
Lal17g0560 1078 CDD PHD_TCF19_like 451 501 - -
Lal17g0560 1078 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1078 IPR025780 -
Lal17g0560 1078 PANTHER PHD FINGER PROTEINS 1 1078 - -
Lal17g0560 1078 ProSiteProfiles SET domain profile. 936 1053 IPR001214 GO:0005515
Lal17g0560 1078 SMART PostSET_3 1062 1078 IPR003616 -
Lal17g0560 1078 MobiDBLite consensus disorder prediction 1 28 - -
Lal17g0560 1078 SMART set_7 936 1059 IPR001214 GO:0005515
Lal17g0560 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 693 IPR013083 -
Lal17g0560 1078 MobiDBLite consensus disorder prediction 89 109 - -
Lal17g0560 1078 Pfam PHD-zinc-finger like domain 698 810 - -
Lal17g0560 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 812 IPR013083 -
Lal17g0560 1078 ProSiteProfiles Zinc finger PHD-type profile. 642 693 IPR019787 -
Lal17g0560 1078 CDD PHD_ATX3_4_5_like 644 690 IPR042011 -
Lal17g0560 1078 Gene3D SET domain 836 1078 IPR046341 -
Lal17g0560 1078 Pfam PWWP domain 250 343 IPR000313 -
Lal17g0560 1078 CDD SET_SETD1-like 923 1074 - -
Lal17g0560 1078 SUPERFAMILY Tudor/PWWP/MBT 242 350 - -
Lal17g0560 1078 Pfam PHD-finger 657 691 - -
Lal17g0560 1078 CDD ePHD_ATX3_4_5_like 699 810 IPR041955 -
Lal17g0560 1078 ProSitePatterns Zinc finger PHD-type signature. 645 690 IPR019786 -
Lal17g0560 1078 SMART PHD_3 755 811 IPR001965 -
Lal17g0560 1078 SMART PHD_3 450 502 IPR001965 -
Lal17g0560 1078 SMART PHD_3 644 691 IPR001965 -
Lal17g0560 1078 ProSiteProfiles Zinc finger PHD-type profile. 448 504 IPR019787 -
Lal17g0560 1078 Pfam SET domain 947 1052 IPR001214 GO:0005515
Lal17g0560 1078 SUPERFAMILY FYVE/PHD zinc finger 642 707 IPR011011 -
Lal17g0560 1078 SUPERFAMILY SET domain 926 1078 IPR046341 -
Lal17g0560 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 506 IPR013083 -
Lal17g0560 1078 ProSiteProfiles Post-SET domain profile. 1062 1078 IPR003616 -
Lal17g0560 1078 MobiDBLite consensus disorder prediction 86 120 - -
Lal17g0560 1078 Gene3D - 244 351 - -
Lal17g0560 1078 ProSiteProfiles Extended PHD (ePHD) domain profile. 696 811 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0560 Lal-Chr17 3978626 3988908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0560 645 810 C2H2 Transcription Factor Family AT3G14740 33.526 2.30e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal17g0560 zf-HC5HC2H_2 1.4e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0560 - - aprc:113853254 1716.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0560 17 3978626 3988908 Lal21g0566 21 4175834 4185434 LSH
Lal17g0560 17 3978626 3988908 Lal4g0487 4 3475611 3485583 LSH