Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0557 ATGTCATCGACGCTGTTGGAAGTGACGCGTGCGTCGCACGAGGAAGTTGAGCGATTGGAGCGGTTGATAGTGAAGGACCTTCAGAATGAACCAGCCAGTAACAAGGATCGTTTGTTTCAGAGTCACCGCGTCAGAAACATGATCGATACCGTTACTTCCATTACGCATAAGCTTGTTGAGATATATGAAGATAGTGACAATGCAAGAAAAGATGAGATTGCTGCACTCGGCGGCCAAACTGCGAGTGGAATCAACGTTTTCAGTGCCTTTTATGATAGACTCAAGGAGATACGAGAATATCATAGGAAACACCCAGTTGCTCGCGGTGTTGTTGATCCTAATGATGATTCTGAAGTACTTCTTAAAGAGGAGCCTCCAATCGAATTTAGTGGGGAGGAAGCTTTTGGTCGATACTTGGACTTGCATGAGTTGTACCATCTCTATATAAATTCTAAGTTTGGAGAGCCAATTGAGTATTCTGCCTACCTTGATGTTTTCTCGGATATAGATAAGGTTCCCCATAAAAAGAAAATGACCAGGCGAGTTGTGCAGTACAGGGAATATTTGGAAAATCTTTTGGAGTATCTGTTATACTTTTTCCAGCGGACAGAACCCCTACAAGATTTTGATCGAATTTTCTCAAAGGTAACAAGTGAGTTTGAAGAAAATTGGGCTGCTGGAAATGTACAGGGATGGGATAATGACAATCAGGAGAACGGACATGTACCTTCTCAGCATACTGCAATTGATCTTGATTATTACAGTACAGTTGAAGAGCTGGTGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCACTGGCTGCGTTGGGACTTAAGACTGGTGGTACTGTTCAGCAACGTGCAGAGAGACTCTTCCTCACAAAGGACACACCTCTTGAAAAGTTGGATAAAAAGCATTTTGCTAAGGTGGGGCGTGGTTTACAAAAAAATGGGGTTGGTGCAGCTCCTCAACAAGATGAAAATTCTAAAGAAATTGCATTGATGGAGGCTAAAATGAAAAAACTGTGTGATTTGTTAGAAGAGACAATTGCTCGAACAAAAGACAATGTTGTAAAGAAGCAAGCCCTGACATATGAGGAAATTGAAGCGGAACGTCAGGAGGAAGAGACACAAGAGGACACTGAAAGTGACGATGAGGAGCAACAAATATACAATCCCCTGAAATTGCCAATGGGATGGGATGGGAAGCCTATTCCATATTGGCTGTATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTACAGTTATTGGGGGCGTCGGGCTTTTGAACGGCATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGCCTTGGTATACCAAATACCAAGAACTTCAATGAAATCACATCAATTGAGGAAGCAAAGGATCTTTGGAAGAAGATACAGCAGAAACAAGGAGTCACAAAGTGGCGCCCAGATCTTGAAGAAGAGTATGAAGACAAAGAAGGCAACATCTATAATAAGAAAACATACACTGATTTACAGCGCCAGGGCCTGATTTAA 1542 0.4267 MSSTLLEVTRASHEEVERLERLIVKDLQNEPASNKDRLFQSHRVRNMIDTVTSITHKLVEIYEDSDNARKDEIAALGGQTASGINVFSAFYDRLKEIREYHRKHPVARGVVDPNDDSEVLLKEEPPIEFSGEEAFGRYLDLHELYHLYINSKFGEPIEYSAYLDVFSDIDKVPHKKKMTRRVVQYREYLENLLEYLLYFFQRTEPLQDFDRIFSKVTSEFEENWAAGNVQGWDNDNQENGHVPSQHTAIDLDYYSTVEELVEVGPERLKEALAALGLKTGGTVQQRAERLFLTKDTPLEKLDKKHFAKVGRGLQKNGVGAAPQQDENSKEIALMEAKMKKLCDLLEETIARTKDNVVKKQALTYEEIEAERQEEETQEDTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKKIQQKQGVTKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0557 513 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Lal17g0557 513 ProSiteProfiles Zinc finger matrin-type profile. 418 449 IPR000690 GO:0003676|GO:0005634|GO:0008270
Lal17g0557 513 Pfam Replication stress response SDE2 C-terminal 228 308 - -
Lal17g0557 513 MobiDBLite consensus disorder prediction 367 387 - -
Lal17g0557 513 PANTHER SPLICING FACTOR SF3A-RELATED 1 513 - -
Lal17g0557 513 Coils Coil 357 384 - -
Lal17g0557 513 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 128 177 IPR031774 -
Lal17g0557 513 MobiDBLite consensus disorder prediction 368 386 - -
Lal17g0557 513 PANTHER BNAA03G01920D PROTEIN 1 513 - -
Lal17g0557 513 Pfam SF3a60/Prp9 C-terminal 394 513 IPR024598 GO:0000398|GO:0003723|GO:0005681
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0557 Lal-Chr17 3950550 3958021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0557 1 513 C2H2 Transcription Factor Family AT5G06160 73.879 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0557 K12827 - gmx:100815393 883.248