Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0544 ATGGGTCGTAGGAAGATTGAGATCAAGATGGTGAAGGACCTGAACACAAGGCAAGTAACTTTTTCTAAGCGTAGATCAGGCTTATTTAAGAAAGCTAATGAGTTATCTATCATGTGTGGTTGTGAACTTGCTATTGTTATGTTCTCTCATGGGAATAAGCCTTACTCTTATGGCCACCCAAATGTTGATGCTGTTGCAGCCAAAGTTCTTCAAAAAGAACCTAACTCAAACAGTGTTCAATGTAACTCATCTTCTAATGATGAGAAATTGAACAAGCTGAATGAAGAACTTAATGATATAATGGAGCAAACATATGAGGAAGCAAAGAAAGGTGAAGCCCTTGATAAGGCTCTAGAAGAGAAAAAGAAGGAACTTGAGAATTTTCAAGATTTGAGTGTTTTGGAGGAACTGAGGTTTAACATTAAGGAACGTATGAATGAGTTGGAGGCTGTGGAAGCTATGCTGATGATTAAGGAACAAGAACCAATATAA 492 0.374 MGRRKIEIKMVKDLNTRQVTFSKRRSGLFKKANELSIMCGCELAIVMFSHGNKPYSYGHPNVDAVAAKVLQKEPNSNSVQCNSSSNDEKLNKLNEELNDIMEQTYEEAKKGEALDKALEEKKKELENFQDLSVLEELRFNIKERMNELEAVEAMLMIKEQEPI 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0544 163 Coils Coil 83 103 - -
Lal17g0544 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 57 IPR002100 GO:0003677|GO:0046983
Lal17g0544 163 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal17g0544 163 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal17g0544 163 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal17g0544 163 PANTHER MADS BOX PROTEIN 2 159 - -
Lal17g0544 163 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Lal17g0544 163 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal17g0544 163 Coils Coil 111 161 - -
Lal17g0544 163 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal17g0544 163 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 159 - -
Lal17g0544 163 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0544 Lal-Chr17 3841055 3841546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0544 1 157 Type I MADS-box Gene Family AT2G34440 40.936 2.47e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal17g0544 SRF-TF 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0544 - - lang:109342374 169.088