Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0539 ATGGATGACAGCTTTTCTGATATTTTTGAGGACAGAGAGTTTGGTGGAGATGATCTCTTTGCCATTTTGGAAAGCCTAGAAGACTTCACTACTGATTTTTCTCCCATTAACGAAACTGTTATTGGTTCCTCAACTTTTATTGAGGAAACATCGAGATTGGTGTCACAGAAGTCAACCTCTTCAAGTGTTCAAGTACAACAACATGGTTCAGAAGAAACTGAGCTTGTAACCTCGCCAAAAAGCAAGAGACAGAAAGTTTCTCCTAACACTGACACAGAAGAAGCAAACCAAGATGGACAACAAAGGATTTCTCACATTACAGTGGAGCGCAACAGAAGAAAGCAAATGAATGAGCACTTGTCTGTGTTGAGGTCACTTATGCCTTGTTTTTATGTCAAAAGAGGAGATCAAGCATCAATAATTGGAGGTGTGGTTGATTACATCAACGAATTGCAGCAGGTACTACAAGCCCTGGAGGCCAAGAAACAAAGAAAAGTTTATACTGATGTACTAAGTCCTAGGCTAGTTTCTTCAAGCCCAAGGCCTTCACCACTTAGTCCAAGAAGACCACCTCTGAGCCCTAGACTAAACCTTCCCATTAGTCCAAGGACTCCACAACCAGGTAGCCCTTACAAGCCAAGGTTGCAACCAACAGGTTACACCATTTCACAAACCATATCAAACTCTCTTGAGCCATCTCCAACTTCTTCTGCTAATTCCTCTATCAATGATAACATCAATGAGCTTGTTGCTAATTCCAAGTCTCCTATTGCTGACGTGGAGGTCAAGTTTTCAGGTCCACATCTTCTTTTGAAGACTGTTTCTCAAAGAATTCCAGGGCAAGCTTTGAAGATTATGTTAGCACTTGAAGAAATTGCCCTTGAGATTCTCCATGTTAACATTAGCACTGCTGATGAAACCATGCTGAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTAGCTCAACAAATTCAGCAAACATTCTGCTAA 1011 0.4105 MDDSFSDIFEDREFGGDDLFAILESLEDFTTDFSPINETVIGSSTFIEETSRLVSQKSTSSSVQVQQHGSEETELVTSPKSKRQKVSPNTDTEEANQDGQQRISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYTDVLSPRLVSSSPRPSPLSPRRPPLSPRLNLPISPRTPQPGSPYKPRLQPTGYTISQTISNSLEPSPTSSANSSINDNINELVANSKSPIADVEVKFSGPHLLLKTVSQRIPGQALKIMLALEEIALEILHVNISTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0539 336 Coils Coil 144 168 - -
Lal17g0539 336 PANTHER TRANSCRIPTION FACTOR FAMA 5 336 IPR044283 GO:0003700|GO:0010052
Lal17g0539 336 SMART finulus 106 157 IPR011598 GO:0046983
Lal17g0539 336 MobiDBLite consensus disorder prediction 173 218 - -
Lal17g0539 336 PANTHER - 5 336 - -
Lal17g0539 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 151 IPR011598 GO:0046983
Lal17g0539 336 MobiDBLite consensus disorder prediction 183 212 - -
Lal17g0539 336 Pfam Helix-loop-helix DNA-binding domain 101 152 IPR011598 GO:0046983
Lal17g0539 336 Gene3D - 90 165 IPR036638 GO:0046983
Lal17g0539 336 CDD bHLH_AtFAMA_like 103 174 - -
Lal17g0539 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 168 IPR036638 GO:0046983
Lal17g0539 336 MobiDBLite consensus disorder prediction 58 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0539 Lal-Chr17 3810526 3813418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0539 9 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.852 3.09e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal17g0539 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0539 K20558 - gmx:100808130 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0539 17 3810526 3813418 Lal4g0468 4 3298576 3301585 LSH