Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0536 ATGGATCAGAGTATCCTATGCAAATACACTGTGCATCATAGCGTCACAAAAAAGCTCGCAAAGCCAAAGAGAACTTCTAATAGCAATACCACAGAGTCAATGGTTCCGAGAGTGGTTCGTATATCTGTCACTGATCCAGATGCTACTGATTCTTCTAGCGATGAGGAAGGAGAGAGTCTCAAACGGAAGAGAATAAAGCGCTATGTCAACCGTATTGACATTGAAATCGCCACCAAAAAACCCATTTCCGGTTTATCTAGAAAGAGGCCCGCGGCTAGCCAGAATAACATCCACCGCTCACCGGCGAAGGGTTCTTCCACTGTGAACACCGCCGTGAGAAAGTTCCGTGGTGTGAGACAGAGGCCGTGGGGTAAATGGGCCGCAGAGATTCGAGACCCTTTGAAAAGGGTTAGGCTCTGGTTGGGTACCTATGACACTGCCGAAGAAGCTGCCATTGTTTATGATAATGCCGCGATTAAGCTTCGTGGCCCTGATGCATTGACAAATTTCCTCACACCGCCATTGAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGGACAAGAAGGAAAATCCACGGTGGTTGTCACTGCCGTGAAACCAGAAATGAAGGTGGTTGTTAATGCTGAAGCTTCAGGTTCGAGTTATGATTCCGGCGATGATCAGTGTCTGATCCTTTGTTCTCCTACTTCTGTTCTTCAATTCAGAAATAATGAAGAGGCAACAGAGTCTCAAAAATCTCTTGAAGCTGAACAAATGTCAGTGAAAGAGGTTTTCCGAGAGTGTGAAGGTGAGACAAGTTTATTTGATGAAACTGGTGAATTTTTTCAACTTGAAATGCCTATTTGGGAAGAAGTGTTCAATCTTGAAACACCACAATGCCTTGATAATATGCTCTTTGAAAAAGAACAACAACCGAACATGATGTGTGAAACGACACCGGTTTTGTCGGATGATGATTTCTATGACAACCTTAACCTCGCTGATGAGCTTTTTGATTTTGACAAAGCATGTTCTCTACCATCAACTTTGTGCCAAGTGGACGATTATTTTCAAGACATTTTGTCATCTTCAGATCAACTCGTGGTTCTCTGA 1095 0.4347 MDQSILCKYTVHHSVTKKLAKPKRTSNSNTTESMVPRVVRISVTDPDATDSSSDEEGESLKRKRIKRYVNRIDIEIATKKPISGLSRKRPAASQNNIHRSPAKGSSTVNTAVRKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYDTAEEAAIVYDNAAIKLRGPDALTNFLTPPLKEKEKEKEKEKGQEGKSTVVVTAVKPEMKVVVNAEASGSSYDSGDDQCLILCSPTSVLQFRNNEEATESQKSLEAEQMSVKEVFRECEGETSLFDETGEFFQLEMPIWEEVFNLETPQCLDNMLFEKEQQPNMMCETTPVLSDDDFYDNLNLADELFDFDKACSLPSTLCQVDDYFQDILSSSDQLVVL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0536 364 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 354 - -
Lal17g0536 364 SUPERFAMILY DNA-binding domain 114 171 IPR016177 GO:0003677
Lal17g0536 364 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Lal17g0536 364 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Lal17g0536 364 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Lal17g0536 364 CDD AP2 114 170 IPR001471 GO:0003700|GO:0006355
Lal17g0536 364 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Lal17g0536 364 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Lal17g0536 364 MobiDBLite consensus disorder prediction 88 107 - -
Lal17g0536 364 MobiDBLite consensus disorder prediction 83 107 - -
Lal17g0536 364 MobiDBLite consensus disorder prediction 18 61 - -
Lal17g0536 364 MobiDBLite consensus disorder prediction 21 37 - -
Lal17g0536 364 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Lal17g0536 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 5 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0536 Lal-Chr17 3748216 3749310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0536 7 363 AP2-EREBP Transcription Factor Family AT4G27950 37.772 5.73e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal17g0536 AP2 7.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0536 - - lang:109327510 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0536 17 3748216 3749310 Lal21g0553 21 4059380 4060453 LSH