Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0525 ATGGGAAGGTGTTGGTTTTTTGAGGTGTTGGTTGTGGTAGGGTGTGCATGCTTGGTTGGTAATGTTGTAGGGTACCCTGCAGAGGATCTGGTGGAGAAGCTACCTGGGCAACCCAATGTTGGGTTCAAACAATATGCTGGGTATGTTGACATAGATGTCAAAAGTGGGAAGAGTTTGTTCTACTATTTTGTCGAAGCTGACCATGACCCTCAAAACAAGTCCCTTACCCTTTGGCTCAATGGAGGTCCTGGATGTTCCTCCGTTGGAGGAGGTGCCTTTTCTGAATTGGGCCCCTTTTATCCTAGAGGTGATGGACGTGGTCTACGAGTAAATTCAAGGTCTTGGAATAAAGCATCCAACCTCCTCTTTATTGAGTCTCCTGCTGGTGTTGGTTGGTCATACTCAAATACCTCTTCAGATTACAACATTGAAGATGCGTCCACTGCCAAGGATATGGTTATGTTCTTCCTAAAATGGTACGAGAAGTTTCCATCCTACAAATCAAGGGAGTTGTTCCTCACTGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGTTGATGCACTTCTAAACTATAATGCCAAATCAACTGATTTCAAATTCAATATCAAAGGAGTGGCTATTGGAAACCCACTTCTGAAACTTGGTAGTAATGAGCAAGCAAGATATGAATACTACTGGTCACATGGAATGATCTCTGATGAAATAGGCCTAACCATAAAGAAAGAATGTATTTTTGATGATCGTGTCTCTAGTGATATCGTCAATGTATCTAAAGCATGCCTTCTTGCCAAAAATGAAGCAAGTGAAAGTGTTGGCAGATATATAAACCATTATGATGTCATTCTAGATGTTTGTTATCCAGCAATTGCTGAACAAGAACTGAGATTGCATAAATCGATTACTAAATTGAGTATAGGTGTAGATGTATGTATGTCACATGAAAAATCCTTTTACTTAAATCTCCCTGAGGTTCAGAAGGCTCTTCATGCAAATCGTACAAATCTTCCTTATAAGTGGACTATGTGTAGTGATGTTTTAGATTATAACAGAACAAATTTGAGCATCAATACCGTTCCGCTTCTGAAAAGGATAGTTCAAAACCACATTCCAGTGTGGATTTTTAGTGGAGATCAAGATGCTGTTGTGCCATTAACGGGTACTCGTACACTGATCCGTGAACTAGCTCATGAACTCAACTTCAACATTACAGTTCCTTATGGAGCTTGGTTCCACGGTGGACAGGTTGGAGGATGGGTAATAGAGTATGGAAATATCTTGACATTTGCTACTGTAAGAGGAGCTGCTCATATGGTACCTTATGCACAACCTTCTAGATCACTCCATCTATTCAGTGATTTTGTGCTTGGTAGGAGATTACCAAATGCAACTCTCCCTTCAATTGATTAA 1413 0.4041 MGRCWFFEVLVVVGCACLVGNVVGYPAEDLVEKLPGQPNVGFKQYAGYVDIDVKSGKSLFYYFVEADHDPQNKSLTLWLNGGPGCSSVGGGAFSELGPFYPRGDGRGLRVNSRSWNKASNLLFIESPAGVGWSYSNTSSDYNIEDASTAKDMVMFFLKWYEKFPSYKSRELFLTGESYAGHYIPQLVDALLNYNAKSTDFKFNIKGVAIGNPLLKLGSNEQARYEYYWSHGMISDEIGLTIKKECIFDDRVSSDIVNVSKACLLAKNEASESVGRYINHYDVILDVCYPAIAEQELRLHKSITKLSIGVDVCMSHEKSFYLNLPEVQKALHANRTNLPYKWTMCSDVLDYNRTNLSINTVPLLKRIVQNHIPVWIFSGDQDAVVPLTGTRTLIRELAHELNFNITVPYGAWFHGGQVGGWVIEYGNILTFATVRGAAHMVPYAQPSRSLHLFSDFVLGRRLPNATLPSID 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0525 470 Pfam Serine carboxypeptidase 36 457 IPR001563 GO:0004185|GO:0006508
Lal17g0525 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Lal17g0525 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Lal17g0525 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Lal17g0525 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
Lal17g0525 470 ProSitePatterns Serine carboxypeptidases, serine active site. 173 180 IPR018202 GO:0004185
Lal17g0525 470 Gene3D alpha/beta hydrolase 26 288 IPR029058 -
Lal17g0525 470 SUPERFAMILY alpha/beta-Hydrolases 28 461 IPR029058 -
Lal17g0525 470 Gene3D - 359 458 - -
Lal17g0525 470 Gene3D - 312 349 - -
Lal17g0525 470 PANTHER CARBOXYPEPTIDASE 6 465 - -
Lal17g0525 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 465 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0525 Lal-Chr17 3651873 3655579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0525 319 461 Calmodulin-binding Proteins AT2G22960 27.972 2.49e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0525 K16297 - gmx:100815723 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0525 17 3651873 3655579 Lal17g0525 17 3651873 3655579 ECH
Lal17g0525 17 3651873 3655579 Lal21g0545 21 3972804 3977500 LSH