Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0499 ATGGGGAGGGGTAAGATAGAGATAAAGAGGATTGAGAATTCAAGCAACAGACAAGTAACCTACTCAAAAAGGAAGAATGGGATCTTAAAGAAGGCTAAGGAAATTACTGTTCTATGTGATGCTCAAGTTTCTCTTATCATCTTTGGTTCTTCTGGAAAGATGCATGAATATATCAGCCCCTCCACCTCGTTAACTGATGTCTTGGACAGATACCACAAAGCCTCTGGGAAGAGGCTCTGGGATGCAAAACATGAGAACCTGAGCAATGAAATTGATAGAGTGAAAAAAGAAAATGAGAGCATGCAAATTGAGCTCAGGCACTTGAAGGGAGAGGACATTAACTCACTGAACTACAAAGAGCTAATGGCCCTAGAGGAAGCCCTTGATCATGGCCTTGATGGTGTCCGTGAGAAAAAGGCAATCTTTTAA 429 0.4172 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFGSSGKMHEYISPSTSLTDVLDRYHKASGKRLWDAKHENLSNEIDRVKKENESMQIELRHLKGEDINSLNYKELMALEEALDHGLDGVREKKAIF 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0499 142 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal17g0499 142 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal17g0499 142 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal17g0499 142 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal17g0499 142 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 140 - -
Lal17g0499 142 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal17g0499 142 Pfam K-box region 82 140 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal17g0499 142 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Lal17g0499 142 ProSiteProfiles K-box domain profile. 84 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal17g0499 142 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Lal17g0499 142 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Lal17g0499 142 Coils Coil 77 111 - -
Lal17g0499 142 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal17g0499 142 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal17g0499 142 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0499 Lal-Chr17 3459258 3460371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0499 1 142 MADS-box Gene Family AT5G20240 70.423 2.88e-72 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal17g0499 K-box 3.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0499 K09264 - gmx:100795861 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0499 17 3459258 3460371 Lal17g0499 17 3459258 3460371 ECH