Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0498 ATGGGTAGAGGCAAGATAGAGATAAAGAGAATTGAGAACACAAGTAACAGGCAAGTAACTTACTCAAAGAGGAAGAATGGGATCTTAAAGAAGGCTAAAGAAATCACTGTTCTATGTGATGCCCAGATTTCCCTTATCATCTTTGGTTCTTCTGGAAAGCTGCATGAGTATATCAGCCCCTCCACCACGTTGATTGATGTTCTAGACAAATACCAGAGAGCCTCTGGGAAAACACTATGGGATGCTAAACATGAGAACCTGAGCAATGAAATTGATAGAGTTAAAAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGGAGGGAGAAGATATTTCCTCACTGAATTACAAAGAGCTGATAGCTTTAGAAAATGCCCTTGAAAATGGCCTAAACGATGTCCGTCAGAAGCAGGCAATTTTTTCCACACTTTTCATAACTATGGAAGTGCATAGCATGTTCAAAAGAAATAGCAAGATATTGGAGGAGCAAAATAAGGAACTCAATTTCCTTATGCAACAACATTTGGCAGAAGGTGAGAGAATGCTTGGACAGTGGATTTGA 567 0.3968 MGRGKIEIKRIENTSNRQVTYSKRKNGILKKAKEITVLCDAQISLIIFGSSGKLHEYISPSTTLIDVLDKYQRASGKTLWDAKHENLSNEIDRVKKENDSMQIELRHLEGEDISSLNYKELIALENALENGLNDVRQKQAIFSTLFITMEVHSMFKRNSKILEEQNKELNFLMQQHLAEGERMLGQWI 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0498 188 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 180 - -
Lal17g0498 188 ProSiteProfiles K-box domain profile. 84 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal17g0498 188 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal17g0498 188 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Lal17g0498 188 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Lal17g0498 188 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal17g0498 188 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal17g0498 188 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal17g0498 188 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal17g0498 188 Pfam K-box region 81 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal17g0498 188 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 180 - -
Lal17g0498 188 Coils Coil 77 111 - -
Lal17g0498 188 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal17g0498 188 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Lal17g0498 188 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0498 Lal-Chr17 3452482 3454760 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0498 1 142 MADS-box Gene Family AT5G20240 68.310 2.59e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal17g0498 K-box 2.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0498 K09264 - gmx:100795861 303.908