Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0496 GTAGAAAGAAAAGGAGAAGAGGAAGAAGAAGAAGAAGATTGTGTGAGAAGTATGGGAAGGGGTAAGATAGAGATAAAGAGAATTGAGAACACAAGCAACAGACAAGTAACCTACTCAAAGAGGAAGAATGGGATCTTAAAGAAGGCTAAGGAAATTACTGTTCTATGTGATGCTCAAGTTTCTCTTATCATCTTTGGTTCTTCTGGAAAGATGCATGAATATATCAGCCCTACCACCACGTTGATTGATGTTCTAGCCAGATACCATAAAGCCTCTGGGAAGAGGCTCTGGGATACCAAGCATGAGAACCTGAACAATGAAATTGATAGAGTGAAAAAAGAGAATGACAGCATGCAAATTGAACTCAGGCACTTGAAGGGAGAAGACATTAACTCACTGAACTACAAAGAGCTAATGGCCCTAGAGGAAGCCCTTGATCATGGCCTTGATGGTGTCCGTGAGAAAAAGAGTGAAGTGCACAGGATGTTCATGAGAAATGGCAAGACTTTGGAGGAGGAAAATAGGGAACTCAATTTCCTTCTAGATTATTGTAGATGA 558 0.4068 VERKGEEEEEEEDCVRSMGRGKIEIKRIENTSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFGSSGKMHEYISPTTTLIDVLARYHKASGKRLWDTKHENLNNEIDRVKKENDSMQIELRHLKGEDINSLNYKELMALEEALDHGLDGVREKKSEVHRMFMRNGKTLEEENRELNFLLDYCR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0496 185 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 182 - -
Lal17g0496 185 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Lal17g0496 185 Pfam K-box region 98 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal17g0496 185 SUPERFAMILY SRF-like 19 113 IPR036879 GO:0003677|GO:0046983
Lal17g0496 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Lal17g0496 185 Coils Coil 94 128 - -
Lal17g0496 185 ProSiteProfiles K-box domain profile. 101 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal17g0496 185 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Lal17g0496 185 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Lal17g0496 185 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Lal17g0496 185 PANTHER MADS-BOX TRANSCRIPTION FACTOR 18 182 - -
Lal17g0496 185 ProSitePatterns MADS-box domain signature. 20 74 IPR002100 GO:0003677|GO:0046983
Lal17g0496 185 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Lal17g0496 185 Gene3D - 30 120 IPR036879 GO:0003677|GO:0046983
Lal17g0496 185 CDD MADS_MEF2_like 19 97 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0496 Lal-Chr17 3439711 3441521 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0496 18 160 MADS-box Gene Family AT5G20240 68.531 3.43e-69 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal17g0496 K-box 7.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0496 K09264 - gmx:100795861 281.567