LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal17g0489	ATGAGCTTCTTAAGGGCTTCTGCATTGTACCATTTTCTTATCACTTATCCTTCTCTGAAATGGATGCCATGTCAGAGTTGGAGTTTCCTTAGATGGCCTGGTCTTGATGGTTTCTTCAGACTTTTTGTGATTTTTCTTCTTTGGTCTATGTTCTCTGAGCTTCGCTATATACCCTCTACTTCTATGTACCCCACCCTAGGTGTTGGTGATCGAATTATAATCGAAAAGGCTTCATATTATATCAGGAGTCCAGCTATAAATGATCTTATAACATTCCGGGATCCGACGCAGCTTTCTGGAGACAACACAGATGCTGTTTTTATTAAGAGAATTGTTGCAAAAGCAGGAGACACTGTTGAGGTTCATAATGGAGGACTCTACATCAATGGTGTTGCTCAGAAGGAAGATTTCATAGCAGAGGCACCAACATACACAATGGAATTAACTTCTGTGCCCAAAGGCCATGTTTATGTATTGGGAGATAATCGTAACAATAGCTATGATTCCCATGTTTGGGGACCACTTCCTGTTAAAAACATTGTTGGAAGATATGTCACTTGCTATCATAGACCAACAAACACTTGA	585	0.4	MSFLRASALYHFLITYPSLKWMPCQSWSFLRWPGLDGFFRLFVIFLLWSMFSELRYIPSTSMYPTLGVGDRIIIEKASYYIRSPAINDLITFRDPTQLSGDNTDAVFIKRIVAKAGDTVEVHNGGLYINGVAQKEDFIAEAPTYTMELTSVPKGHVYVLGDNRNNSYDSHVWGPLPVKNIVGRYVTCYHRPTNT	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal17g0489	194	CDD	S26_SPase_I	53	183	IPR019533	GO:0004252\|GO:0006465
	Lal17g0489	194	SUPERFAMILY	LexA/Signal peptidase	50	188	IPR036286	-
	Lal17g0489	194	TIGRFAM	sigpep_I_bact: signal peptidase I	40	188	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lal17g0489	194	ProSitePatterns	Signal peptidases I serine active site.	59	66	IPR019756	GO:0004252\|GO:0016021
	Lal17g0489	194	Pfam	Signal peptidase, peptidase S26	40	186	IPR019533	GO:0004252\|GO:0006465
	Lal17g0489	194	ProSitePatterns	Signal peptidases I signature 3.	156	169	IPR019758	GO:0004252\|GO:0016021
	Lal17g0489	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	50	66	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lal17g0489	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	107	119	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lal17g0489	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	151	170	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lal17g0489	194	Gene3D	Umud Fragment, subunit A	59	191	-	-
	Lal17g0489	194	PANTHER	CHLOROPLAST PROCESSING PEPTIDASE-LIKE	1	193	-	-
	Lal17g0489	194	PANTHER	SIGNAL PEPTIDASE I	1	193	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal17g0489	Lal-Chr17	3377103	3381496	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal17g0489	62	183	MADS-box Gene Family	AT1G29960	29.268	3.68e-08	48.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal17g0489	K03100		-	gmx:100306121	349.747

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal17g0489	17	3377103	3381496	Lal17g0489	17	3377103	3381496	ECH