Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0488 ATGAATCGTGGTTCATCATTTTCTTCATCAACTACATCATCATTGGCGAAGCGTCATGCATCTGTGTCCAACTCAGAGAAGATTAAGAAGCGACCTCCTCTTACTAATCTCACTAATCACATTTCTTCTCTCAACTCATCACCCACTTTGGTAACATGTGCAAAGAAAGAGCCTCCACCATGCACCATTGGCTCAGCAATTTCTGACAATACACTACTACCCTCTTTGTCAAATGATAAATCTAATATAGCTGTTTTTCCTAAGGCTACTTTTTTACCCAAAAGGGACGAAAATACTCCAAAAGCTGCCACTGTCACTGTTCCTTCTGTTTCAATCAGCAGCATGGATTGTTCTCCAACTAAATCAGATGGGATGTCAATTTCTATAGATGACTCAATGTCTTCTAGTCATTCTTTGAAGAGTCCTGACATTGAGTATCTTGACAACACTGATATTTCAGCTGTTGATTCAATTGACAGAAAGACTTTCACCAATCTCAACATCTCTGACACTACAGAACCAGAAGGAAACACCTGTAGTAGAGACACCGTTGTTGAGTTGGAAAAAGATGACAAAATTGTCAATGTTGATAACAATTACAAGGATCCTCAGCTTTGTGCAACTTTTGCTTGTGATATCTACAAGCACCTGCGTGCATCTGAGGTAAAGAAAAGGCCATCCAAAGACTACATGGAGAAAATCCAGAAGGACTTAAAACCCAGCATGCGCGCTATATTGATTGACTGGCTTGTTGAGGTGGCTGAAGAATATAGACTTGTACCTGATACATTGTATTTGACAGTAAACTACATAGACCGGTATCTTTCAGCGAATGTGATGAGTAGACAAAGGTTACAATTACTTGGTGTTGCCTCTATGATGATTGCCTCTAAATATGAAGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATAACTGATAACACATACTTCAAAGATGAGGTTTTAGAGATGGAATCAGCTGTCTTGAACTTTCTGAAGTTTGAAATGACAGCCCCAACAATTAAATGTTTCTTAAGACGATTTGTTCGTGCAGCTCAAGGAGTTACCGAGGCCCCTTCACTACAACTAGAGTGCTTAACAAACTATATAGCGGAACTGTCTCTCTTGGAGTACAATATGCTTCGTTATGCTCCATCACTTATAGCTGCTTCTGCAATTTTCCTGGCCAAAGTTATACTTTTCCCTTCAATGAACCCTTGGAATTCTACATTGCAGCATTACACACTATACCACCCTTTTGATTTGTGTGATTGTGTAAGGGATCTCCATCGACTTTGTTGCGGCAGCCCGAATTCTGATTTGCTTGCAATTAGGGAGAAATACAATCAACACAAGTACAAATATGTGGCCAAGAAGTATTGCCCTCCTTCAATACCTCCAGAATATTTCCAGAATTGA 1425 0.3972 MNRGSSFSSSTTSSLAKRHASVSNSEKIKKRPPLTNLTNHISSLNSSPTLVTCAKKEPPPCTIGSAISDNTLLPSLSNDKSNIAVFPKATFLPKRDENTPKAATVTVPSVSISSMDCSPTKSDGMSISIDDSMSSSHSLKSPDIEYLDNTDISAVDSIDRKTFTNLNISDTTEPEGNTCSRDTVVELEKDDKIVNVDNNYKDPQLCATFACDIYKHLRASEVKKRPSKDYMEKIQKDLKPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSANVMSRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKDEVLEMESAVLNFLKFEMTAPTIKCFLRRFVRAAQGVTEAPSLQLECLTNYIAELSLLEYNMLRYAPSLIAASAIFLAKVILFPSMNPWNSTLQHYTLYHPFDLCDCVRDLHRLCCGSPNSDLLAIREKYNQHKYKYVAKKYCPPSIPPEYFQN 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0488 474 CDD CYCLIN 339 432 IPR013763 -
Lal17g0488 474 SMART cyclin_7 345 433 IPR013763 -
Lal17g0488 474 SMART cyclin_7 248 332 IPR013763 -
Lal17g0488 474 PANTHER CYCLINS 21 473 IPR039361 -
Lal17g0488 474 PANTHER CYCLIN-A1-1 21 473 - -
Lal17g0488 474 CDD CYCLIN 242 331 IPR013763 -
Lal17g0488 474 Pfam Cyclin, N-terminal domain 212 338 IPR006671 -
Lal17g0488 474 MobiDBLite consensus disorder prediction 1 41 - -
Lal17g0488 474 SUPERFAMILY Cyclin-like 341 466 IPR036915 -
Lal17g0488 474 SMART Cyclin_C_2 341 464 IPR004367 -
Lal17g0488 474 Gene3D - 226 339 - -
Lal17g0488 474 MobiDBLite consensus disorder prediction 1 21 - -
Lal17g0488 474 Pfam Cyclin, C-terminal domain 341 460 IPR004367 -
Lal17g0488 474 SUPERFAMILY Cyclin-like 201 338 IPR036915 -
Lal17g0488 474 ProSitePatterns Cyclins signature. 243 274 IPR006671 -
Lal17g0488 474 Gene3D - 212 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0488 Lal-Chr17 3372762 3376655 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0488 2 474 Core Cell Cycle Gene Families AT1G44110 59.221 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0488 K06627 - gmx:100789565 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0488 17 3372762 3376655 Lal17g0488 17 3372762 3376655 ECH
Lal17g0488 17 3372762 3376655 Lal4g0428 4 2975580 2984814 LSH