Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0484 ATGGCAAGCCAGCAGCAACAACAATCACTTGGAGGTAGTAACCGCATTGTTGCAGTAAATGTCACCCCTCCTAATAATCTTCATCATGATGCCTCTTCAAATCCACAGAAACAAGAACCTGGGTGGAGAAAGTTCATGGCATATGTTGGTCCTGGTTTCCTTGTCTCTTTGGCTTACCTTGATCCTGGAAATTTGGAAACTGATCTGCAAGCTGGAGCAAATCATAAATATGAGTTGTTGTGGGTGGTACTTCTTGGATTGATCTTTGCACTTATCATTCAGTCATTGGCTGCAAATCTTGGTGTATCAACTGGGAAACACCTTGCAGAAATATGTAAAGCTGAGTACCCATTACCTGTAAAGTATTGTTTATGGGTATTTGCTGAGTTTGCGGTGATAGCTGCAGACATTCCTGAAGTAATTGGCACAGCCTTTGCACTGAACATACTCTTCAAAATACCAGTATGGGCTGGAGTTCTTATAACTGGCTGCAGCACTCTCTTACTTCTTTGTCTCCAGAGATTTGGGATTAGGAAGTTGGAATTGTTGATATCAATGTTAGTTTTTGTGATGGCTGCATGCTTCTTTGGTGAACTGAGCTACGTAAAACCCTCTGCTTCTGGTGTATTAAATGGAATGTTTGTGCCCAAACTCAGTGATCATGGTGCCACTGGCGATGCCATTGCTCTTTTGGGTGCTCTTGTTATGCCGCACAACCTCTTCCTCCACTCTGCTCTTGTGCTCACTAGAAAAGTACCAACTTCCGTTCCTGAAATCAATGTTGCATGCAAGTATTTACTCATAGAGAGTGGGTTTGCACTGTTTGTGGCATTTCTAATCAATGTTGCAGTAATTTCTGTATCTGGAACCATTTGTGCTTCCGACAACCTTTCTGCAGAAAATGCGGATCACTGTACCAATCTTACCATTGACAATGCTACATTTCTTCTAAAGAATGTGTTGGGACGATCCAGCTCAACTATTTATGCCATAGCATTGTTAGCCTCAGGACAAAGCTCTGCCATCACTGGAACCTATGCAGGACAATTCATCATGCAGGGTTTCTTGGACTTAAAGGTAAAAAAATGGATCAGGAACTTGGTGACTAGGTGCATTGCCATAGCACCTAGTCTTATTGTTTCCATCATTGGTGGATCTTCCGGGGCTAGTCGACTCATTGTTATTGCATCGATTTTCTCATTCTTTGCTTCCGAGCACAACATGATACTTTCTTTTGAGTTACCATTCGCTTTAATTCCGCTCCTGAAGTTTAGCAGCAGCAACATCAAAATGGGACCTCACAAGAATTCTAGGATTATAATTATCATCTCATGGATCCTAGGCTTTGGGATTATTAGTATCAATGTGTACTATCTTAGTACTGCTTTTGTGGGTTGGCTGATTCATAGCAATCTACCAAAGGTGGCAAATGTGTTCATTGGAATTATAGTATTTCCTCTAATGGCAGTCTACATTGGTTCAATTATCTACCTAACCGTCAGAAAAGATACTGTTAGGACATTTATTGAGACAAAGGATGACCCAAGAATAGATGGTCAATTAGAGTTAAGCCTTGATCCATATAGAGAAGATTTAATTGATATACCATTACCATAA 1617 0.4082 MASQQQQQSLGGSNRIVAVNVTPPNNLHHDASSNPQKQEPGWRKFMAYVGPGFLVSLAYLDPGNLETDLQAGANHKYELLWVVLLGLIFALIIQSLAANLGVSTGKHLAEICKAEYPLPVKYCLWVFAEFAVIAADIPEVIGTAFALNILFKIPVWAGVLITGCSTLLLLCLQRFGIRKLELLISMLVFVMAACFFGELSYVKPSASGVLNGMFVPKLSDHGATGDAIALLGALVMPHNLFLHSALVLTRKVPTSVPEINVACKYLLIESGFALFVAFLINVAVISVSGTICASDNLSAENADHCTNLTIDNATFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQFIMQGFLDLKVKKWIRNLVTRCIAIAPSLIVSIIGGSSGASRLIVIASIFSFFASEHNMILSFELPFALIPLLKFSSSNIKMGPHKNSRIIIIISWILGFGIISINVYYLSTAFVGWLIHSNLPKVANVFIGIIVFPLMAVYIGSIIYLTVRKDTVRTFIETKDDPRIDGQLELSLDPYREDLIDIPLP 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0484 538 Pfam Natural resistance-associated macrophage protein 66 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal17g0484 538 PRINTS Natural resistance-associated macrophage protein signature 124 150 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal17g0484 538 PRINTS Natural resistance-associated macrophage protein signature 152 171 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal17g0484 538 PRINTS Natural resistance-associated macrophage protein signature 177 198 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal17g0484 538 PRINTS Natural resistance-associated macrophage protein signature 227 250 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal17g0484 538 PRINTS Natural resistance-associated macrophage protein signature 337 356 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal17g0484 538 PRINTS Natural resistance-associated macrophage protein signature 365 382 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal17g0484 538 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 43 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal17g0484 538 PANTHER METAL TRANSPORTER NRAMP5 35 538 - -
Lal17g0484 538 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 35 538 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lal17g0484 538 Hamap Divalent metal cation transporter MntH [mntH]. 28 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0484 Lal-Chr17 3342713 3348199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0484 8 538 Inorganic Solute Cotransporters AT1G15960 57.383 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0484 K21398 - gmx:100787785 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0484 17 3342713 3348199 Lal17g0484 17 3342713 3348199 ECH
Lal17g0484 17 3342713 3348199 Lal4g0427 4 2971798 2973185 LSH