Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0477 ATGGAGTTTGTGGATTCTAGAAAACTACTACAACAACATTTTCATGTATTGGCAGTGGATGATAGTGTCATTGATAGGAAGCTTTTGGAGAGGCTCCTTAGAGGTTCTTCATGCAAAGTTACATGCGTGGACTCTGGAGATAAGGCTTTGAAATATCTTGGCCTAATTGATGACCTAGATGATAATACTAAATCCTTAACGTCTATAGAATCAACATCTTCAACTCCACCTCAACCATTTCAAGAAGAGGGAACGAAAGTGAATTTGATAATGACAGACTATTGCATGCCTGGGATGAGTGGCTATGATTTGCTTAAACGAGTCAAGGGATCTTCTTGGAAAGATGTTCCAGTCGTGGTTATGTCATCAGAAGATATACCTTCCAGAATCAGCATGTGCTTGGAAGAAGGGGCAGAAGAGTTTCTATTGAAGCCTCTTCAGTTATCAGATCTCAAGAAGCTTCAGCCATACTTTATGAAATCCCTTGATAATTGTTATCAACAAGAATATGGTAACACTTCCATAGCTTCAGACAATGACCACTTCATCGTCAACAACAATAACATGAATAATAACAACATTAATAGTATTAGTAAAAGGAAGGCCATGTCCCCTGAGCCTCCTGAGAGATCAAGACCCAAAATGAAAGGGTTGGAAGTGGTCTAA 666 0.3904 MEFVDSRKLLQQHFHVLAVDDSVIDRKLLERLLRGSSCKVTCVDSGDKALKYLGLIDDLDDNTKSLTSIESTSSTPPQPFQEEGTKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVVMSSEDIPSRISMCLEEGAEEFLLKPLQLSDLKKLQPYFMKSLDNCYQQEYGNTSIASDNDHFIVNNNNMNNNNINSISKRKAMSPEPPERSRPKMKGLEVV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0477 221 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 220 IPR045279 GO:0009736
Lal17g0477 221 SMART REC_2 14 155 IPR001789 GO:0000160
Lal17g0477 221 MobiDBLite consensus disorder prediction 193 221 - -
Lal17g0477 221 SUPERFAMILY CheY-like 14 154 IPR011006 -
Lal17g0477 221 MobiDBLite consensus disorder prediction 203 221 - -
Lal17g0477 221 CDD REC_typeA_ARR 16 154 - -
Lal17g0477 221 ProSiteProfiles Response regulatory domain profile. 15 159 IPR001789 GO:0000160
Lal17g0477 221 Pfam Response regulator receiver domain 16 153 IPR001789 GO:0000160
Lal17g0477 221 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 11 220 - -
Lal17g0477 221 Gene3D - 15 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0477 Lal-Chr17 3276029 3280166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0477 11 174 Response Regulator Gene Family AT3G57040 57.229 4.60e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal17g0477 Response_reg 6.5e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0477 K14492 - gmx:100801334 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0477 17 3276029 3280166 Lal4g0422 4 2933825 2935779 LSH