Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0471 ATGGATGAGGAAAGAAAGCAAACTTCCCACAAAACACCATACACTGAATTTGAGCAAGTTAACTATGATTTCATTTTAGAAATTAGCTTGCAAGAACAAGAGGGAACATTGACAACTCTAGCAACAATTGAAAGTGACAGTGAAACTGATGAATATGTAAGTGAGTCCTCTTTTGATGATGCAAATGATGATTTTTCAGAAAGCCAAGATTTTGAAGGCTTTCTTGAAGGTGAAGGAAGCAATTATGATGAAATGGAAATGGAAGAAGATGAGATTGACCCAGATGAATTATCTTATGAAGAATTGATTGAGTTAGGAGAGATTATAGGAAAAGAGAATAGAGGTTTATCAAGAAATGAAATCTCTTCATGCTTATACCCTTATACTTGTCAATTTGCTGCATGCAAAAGTGGAATAGATAGGTGTGTGATTTGTCAGGTTGAGTATGAAGAAGGTGAAGCCCTTGTTGCACTTCAATGTGAACACCCTTATCATACACATTGCATAAGTAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATATGTAGCAATGAAGTTTCAGCTCCAAAGATTGTTCATAACAGCAATTCCTGA 594 0.3535 MDEERKQTSHKTPYTEFEQVNYDFILEISLQEQEGTLTTLATIESDSETDEYVSESSFDDANDDFSESQDFEGFLEGEGSNYDEMEMEEDEIDPDELSYEELIELGEIIGKENRGLSRNEISSCLYPYTCQFAACKSGIDRCVICQVEYEEGEALVALQCEHPYHTHCISKWLQIKKVCPICSNEVSAPKIVHNSNS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0471 197 Pfam Ring finger domain 141 182 IPR001841 -
Lal17g0471 197 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 2 191 - -
Lal17g0471 197 MobiDBLite consensus disorder prediction 44 67 - -
Lal17g0471 197 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 191 IPR045191 GO:0061630
Lal17g0471 197 SUPERFAMILY RING/U-box 141 189 - -
Lal17g0471 197 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Lal17g0471 197 MobiDBLite consensus disorder prediction 48 67 - -
Lal17g0471 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 190 IPR013083 -
Lal17g0471 197 SMART ring_2 142 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0471 Lal-Chr17 3236868 3237461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0471 89 193 C3H Transcription Factor Family AT3G63530 48.148 8.41e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0471 K19045 - gmx:100526881 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0471 17 3236868 3237461 Lal21g0522 21 3770347 3770943 LSH