Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0462 ATGGTTAAGAAAGAGTTACAGATCCAGACAGAGCTATCATCAAAGGAAATGCCATCTTTGTCCCCATCATCAGATATCATGAAGAAGAAGTATAAGGGAGTTAGAATGAGGACTTGGGGTTCATGGGTATCAGAGATTAGAGCACCAAACCAAAAAACAAGAATATGGTTAGGCTCTTACTCAACAGCAGAAGCAGCAGCTAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGCTCCTCAGCAAATTTCAATTTTCCATTAACTTCTTCTTCACATTGTAATATTTCTCAAGATACTGTTATGTCCCCTAAATCAATCCAAAGAGTTGCAGCAGCTGCAGGTAATAGTTTCATTAGTGACACTGCAGCCATTATTGTCAATACTCCACCTTCTCCTGATCTTCCAGCTTCATCTTATTCATCATCAGTTTCTTCTCCATCAATGGCTTCATCTCACTCAGATCAAATCAATGATGATGTTTCACTAATGCCATCTTTTGAATATGATCAACAAGAAAATGAGTCAATGGCTTTGCATATGATGGAACCTTGGTACACCTTTGATGGCCTTAGTCCCTTCTTTCATATTGATTCATCTCAGATGCTTGACGATTTATATGAAGAAAGTGACATTCGTTTGTGGAACTTTTGCTGA 657 0.3866 MVKKELQIQTELSSKEMPSLSPSSDIMKKKYKGVRMRTWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANFNFPLTSSSHCNISQDTVMSPKSIQRVAAAAGNSFISDTAAIIVNTPPSPDLPASSYSSSVSSPSMASSHSDQINDDVSLMPSFEYDQQENESMALHMMEPWYTFDGLSPFFHIDSSQMLDDLYEESDIRLWNFC 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0462 218 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Lal17g0462 218 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Lal17g0462 218 MobiDBLite consensus disorder prediction 7 21 - -
Lal17g0462 218 MobiDBLite consensus disorder prediction 1 21 - -
Lal17g0462 218 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Lal17g0462 218 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Lal17g0462 218 MobiDBLite consensus disorder prediction 136 156 - -
Lal17g0462 218 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Lal17g0462 218 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Lal17g0462 218 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Lal17g0462 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF013 11 218 - -
Lal17g0462 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 218 - -
Lal17g0462 218 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0462 Lal-Chr17 3177012 3177668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0462 1 217 AP2-EREBP Transcription Factor Family AT1G21910 45.492 5.17e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal17g0462 AP2 4.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0462 - - gmx:100819512 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0462 17 3177012 3177668 Lal17g0462 17 3177012 3177668 ECH
Lal17g0462 17 3177012 3177668 Lal21g0515 21 3718287 3718940 LSH