Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0453 ATGGAGCAATTGCAGAGTGCTCTTGAGTGTCATAATTTGACAGTTTCCACTGTCCCAGAAAAGGGTCGCTCGCTTTTTGTTACCAGGGATTTCTATCCAGGGGAGGTGATTATATGTCAAGAGCCTTATGTTTGTGTACCAAATAACTCGTCTTCTTCCCAAGTAAGGTGTGATGGATGTTTCACAGCAACTAACCTTAGGAAGTGCTCACGTTGTCGTGTTGTATGGTATTGTGGATCCACATGTCAGAAATCAGAGTGGAAGTTGCATCGTCTTGAGTGTGAAGCCTTCTCGAGACTGGACATGGATAAGAGACAATTTGTCACACCATCCATACGACTCATGCTGAAACTTTATATTCGAAGGAAGTTGCAAAGTGAGAAGATCATCCTAAGCACTGCTATGGACAACTACGACTTGGTGCAGGCACTAGTGGCTCACATGTCTGAAATCACTGAGGAGCAGCTAGTGCTGTACGCACAGATGGCTAATCTTGTACACTTAATACTTCAGTGGCCTGAAATCAATATAAAAGAAATCGCCGAAATTTTTTCTAAGTTTGCATGCAATGCACATACCATTTCTGACAGTGAATTGAGACCTTTGGGAACTGGATTGTATCCAGTTATTTCAATTATCAATCACAGCTGCTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGGTCGGCATCAGTACGTGCTGTGCAACATGTACCTAAAGGTACTGAGGTATTCATAAGTTATATAGAGACTGCTGGAAGCACTATGACTCGACAGAAAGCTCTCAATGAGCAGTATCTATTCACTTGTACATGTCCCCGCTGTTCTAAAGTGGGCCAGTATGACGATATTCAAGAAAGTGCGATTCTAGAAGGATACAGATGCAAAAATGAAAAATGTGATGGTTTCTTGCTTCGTACAACTGATGGAAAAGGATTCCAATGCCAACAATGTGGAGTAGCTAGGGACACGGAAGAGATAAAGAAAATTGCAAATGAATTGAGATCGTTGTCAGAAGAAGAAGCCTCTAAGCTTTCTTCTACAGGCAATTATCAAGAAGCTATTTTCATATACGAAGTTATTGAGAAACTGCAAACAAAACTCTATCATCCTTTCTCAATCTGGTTGATGCAAACTCGAGACAAGATTTTGAAGTCATTAATGGAGCTGGAACGTTGGAGTGAAGCTTTAGCGTACTGCAAATTGACCATACCAGTCTATCAAAGAGTGTATCCAGCTGTTCACCCTCTGCTTGGTTTGCAATACTATACTTGTGGAAAACTCGAATGGTATCTGGGGGAGACAGAAGAAGCTGTTAAATCACTGACAAAGGCAGTGGATACACTAAGGATTACTCATGGCACAAAGACACCTTTCATGAAGAAACTATTGATGAAGTTGGAAGAAGCTCGCGCTGAAGCTTCTTACAAACAGTCTTCGACAGAGGAGTAG 1452 0.416 MEQLQSALECHNLTVSTVPEKGRSLFVTRDFYPGEVIICQEPYVCVPNNSSSSQVRCDGCFTATNLRKCSRCRVVWYCGSTCQKSEWKLHRLECEAFSRLDMDKRQFVTPSIRLMLKLYIRRKLQSEKIILSTAMDNYDLVQALVAHMSEITEEQLVLYAQMANLVHLILQWPEINIKEIAEIFSKFACNAHTISDSELRPLGTGLYPVISIINHSCLPNSVLVFEGRSASVRAVQHVPKGTEVFISYIETAGSTMTRQKALNEQYLFTCTCPRCSKVGQYDDIQESAILEGYRCKNEKCDGFLLRTTDGKGFQCQQCGVARDTEEIKKIANELRSLSEEEASKLSSTGNYQEAIFIYEVIEKLQTKLYHPFSIWLMQTRDKILKSLMELERWSEALAYCKLTIPVYQRVYPAVHPLLGLQYYTCGKLEWYLGETEEAVKSLTKAVDTLRITHGTKTPFMKKLLMKLEEARAEASYKQSSTEE 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0453 483 SUPERFAMILY TPR-like 342 448 IPR011990 GO:0005515
Lal17g0453 483 ProSiteProfiles Zinc finger MYND-type profile. 57 94 IPR002893 -
Lal17g0453 483 Gene3D - 56 106 - -
Lal17g0453 483 ProSitePatterns Zinc finger MYND-type signature. 57 94 IPR002893 -
Lal17g0453 483 Gene3D - 107 191 - -
Lal17g0453 483 Pfam MYND finger 57 94 IPR002893 -
Lal17g0453 483 SUPERFAMILY SET domain 12 248 IPR046341 -
Lal17g0453 483 Gene3D SET domain 24 275 IPR046341 -
Lal17g0453 483 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 474 - -
Lal17g0453 483 ProSiteProfiles SET domain profile. 11 249 IPR001214 GO:0005515
Lal17g0453 483 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 474 - -
Lal17g0453 483 Gene3D Tetratricopeptide repeat domain 403 482 IPR011990 GO:0005515
Lal17g0453 483 Pfam SET domain 22 248 IPR001214 GO:0005515
Lal17g0453 483 SMART set_7 11 255 IPR001214 GO:0005515
Lal17g0453 483 Coils Coil 320 340 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal17g0453 SET 2.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0453 K11426 - gmx:100789518 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0453 17 3106608 3117031 Lal17g0453 17 3106608 3117031 ECH