Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0450 ATGGCACAAATGGTTGCAATGCCTTTGGCCCCATCACTCGCTCTAATCTCGAATCCCAAATCTCTTTCAACAAGATTCTCCATTTCTCTTCCTAACCCTCCCAAGGTTCAGGGATTGAGCATAAGATGTGTTCGTGTTGGAGGAGTGGAGATTCCAAACAACAAGAGAATTGAGTATTCATTGCAGTACATTCATGGAGTTGGAAGGAATATAGCTCGTCAAATTCTAACTGATATAAATATGGATAATAAAATAACAAAGGAGCTTACTGAAGAAGATCTAATTACTCTCAGGGATGAAGTCTCCAAATACATGATTGAAGGCGACCTGAGAAGGTTTAATGCACTTAATATAAGGAGACTGAAAGAGATCCAGTGTTACAGAGGAATAAGGCATATTCAAGGGCTTCCTTGCAGAGGACAGCGTACCAAGAACAATTGCAGGACCTTGAAGGGTAAGAGAGTTGCCATTCCTGGCAAGAAGAAAAAGTAA 492 0.4065 MAQMVAMPLAPSLALISNPKSLSTRFSISLPNPPKVQGLSIRCVRVGGVEIPNNKRIEYSLQYIHGVGRNIARQILTDINMDNKITKELTEEDLITLRDEVSKYMIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKRVAIPGKKKK 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0450 163 Pfam Ribosomal protein S13/S18 45 149 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal17g0450 163 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 1 162 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal17g0450 163 ProSitePatterns Ribosomal protein S13 signature. 128 141 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal17g0450 163 TIGRFAM uS13_bact: ribosomal protein uS13 45 154 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal17g0450 163 SUPERFAMILY S13-like H2TH domain 44 155 IPR010979 GO:0003676
Lal17g0450 163 Gene3D - 44 112 - -
Lal17g0450 163 Gene3D 30s ribosomal protein s13, domain 2 113 163 IPR027437 -
Lal17g0450 163 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 162 - -
Lal17g0450 163 Hamap 30S ribosomal protein S13 [rpsM]. 43 159 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal17g0450 163 ProSiteProfiles Ribosomal protein S13 family profile. 46 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0450 Lal-Chr17 3076187 3077565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0450 44 161 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.873 4.00e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0450 K02952 - gmx:100500355 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0450 17 3076187 3077565 Lal17g0450 17 3076187 3077565 ECH